Gene detail

Detailed information of XP_032241860.2 in Nematostella vectensis

Genomic Location: NC_064037.1:15599701...15605464
NR annotation: XP_032241860.2, uncharacterized protein LOC5516091 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032385969.2

ggcttcctgtgtcTCCATAATCTTGAGTCCCCTTTCGCTCTCCCGAAGCTTCTTGAGTTTCAACTCCAACCATCGTAAAAAAGGTTATCATCACGCTTGGCTGCTCGTTCCTTCCAATCTTCGCTTAAGTGCAACATACAAAACATGAATGAAGTACAGTGGGAAGTTGATGACTTACTTAACGGTTATCCAAAGACATCTGCCAGTGTTGTGCTACAGTTCACGGAACCAAGTCTATCAAGATGTTTCGCTGCATATTACCATGGTGTACACCATATTTCCCAATATTTGAAAGATATCAGAGAACATCTGGACGGTGAAAGGGATAGCGTCTATGTTATGGCAGTAAAAGTTGCTCGGATTTGTCTTAAGTTGTATTATGCCCAAGCTGTGAAAGTCACTCTCAAATTGTACCTAAACCAAAAAACCCACAATACAACCACTATAGATATTAAAGCTGAAGATCTCAATTGGAAAGAATACCTTGTCTCAATTGAATCTAGAACCGACCAATGTGAGAAAGTTTCAAGAGCTGTTGGCCTTCTGAAGAAGAAGATGAAAGTAGCAAAGTTTTCCAAGGCTTTTCACACAACCTTCCCAGGACCAGATGAAGACTACAGCTGTGAATGTCCTGATATGGTTCATAAAATCAACATGGCAGCTTTGGTACAAATAAGTCTTGATCCTGCTAGATTGAGAGGCATTTTGAATGAGATAGAAGATGATTGCAATTCACACTATGATGATGGCCATAAAATGACCCTTTCAATAATTGGGATGGAATTGGCAGTCAGTGATGAGCCTTTTTGGTATGTTTATTTTGGTAGCAGGTGCCTACCAGCTATCATTCCTCTTGCTGATGTTTCGCCAAACCTTAAAATTCTCACAGAACAGGGTTTATCATTGGAAAACAAAGCCTTAAAATGCATTCAAAGTGTGTATACATGGTTCCCTTATGATATACAAAAGGGTTTTAGAGGCTTCTACCCTACTGTGGTATTCACAGAAAATGAACTATGTGAGGGTGATGGCATTGAGAAAGACATAAAAGAGAGCCAGGCACAAGCAACAGAGCATAGTGAACTCCATGGTGCTAGCGTATATGGTGTTGTATGTCCAGGAAGAGAGCCTAACCAGATTACTCCATCTAACCAACACGTAGCTCTAGTGACAGGAGCTGCCAAGCGACTTGGTGCTGGTATTGTAAGAGCACTTCATGGATCGGGTTTCAGGGTTGTTATCCATTACAACAACTCTGGAGAAGATGCTGAGAAGATTGTCCAGGAAATGAACAGTGTGCGTTCAGACTCTGCCATCATGTTGAAGGCAGACCTCAGCACCAATATTCAAGAAACAGCAAGAAAGCTAATAGAAGACACTGTAACAGCATTTGGACAACTGGACCTTCTTGTGAACAATGCATCTCAATTCTGCCCAACAGAATCAGGCAGTGTACAAGAAGAAACATGGAACAAGCTTATGGGTGTGAACTTGAGTTTTCCATTCTTTTTATCTCAGGCCGCATTCCCACACTTGAAGAGATCACATGGTTCCATTATCAACATGATTGATATCCATGCTGAAAGACCTCTGGCAAATCACTCAGTGTACTGCGTGAGTAAGGCTGGCCTACACATGTGCACACAGGCCCTGGCAAAGGATTTTGCCCCTGACGTGAGAGTGAATGGTGTAAGTCCTGGATTCATCATGGTGCCTGGAGACTGGAGTGAGGAGAAGGAAGCCGAGATCTTGAAGAATGTCCCTTTGGGCCGGCAGGGCGAGCTTGCAGATATCACTGAGGCTGTGCTGTACTTGGCCCAGGCAGGGTACGTCACTGGGCAGGTCCTAGCTGTTGACGGGGGTAGAACCCTGGCACAGTAATACTAGCTGTTGACGGGGGGAGAACCCTGACACAGTATGCAGGGTCACCTGACAGATATGCATAATGTCAATGGAAAAAGAATTCTAGTGTTATAAAGCAGGTGGACAGGTTGATTAGGTgcatttaaaatgtttttttttcttctggaACGGAAGTCCTTgagcaggcgcgtacacaagGCGTACACGCCCCCGGCCGAGCGCGGCCGAAGTGCGGCTTCTACCGGTAGCTTTTCTTGGGCGCTTTTCGAAAGTTTGTTTCCCAGGCTAGAGTTGACTTAACActtaattgattttttttgtaaatacgCTAAGACGAGATACCAACTgatttgccccccccccccccattcttTTAGCTGATTggttcattaaaaaaaataataataataaacgtATCCAATGCTCCCCGTTCCCTCTTggattgttttacgttcaTTTCACTATATCATGTAGGATTCCCACATGGATTGCAGTCTGGTCCTTATAGGTACAGCAAGCTTAGCTCTATAATCTAGTCTGTGTGTGGTACCTCCGGGTACTTTGAATAAAACCAAGAAAAAAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P42556	Pteridine reductase 1 OS=Leishmania tarentolae OX=5689 GN=PTR1 PE=1 SV=1
Q01782	Pteridine reductase 1 OS=Leishmania major OX=5664 GN=PTR1 PE=1 SV=2
A0A1C9II22	Noroxomaritidine/norcraugsodine reductase OS=Narcissus aff. pseudonarcissus MK-2014 OX=1540222 GN=NR PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008523 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13561 all species →	adh_short_C2	Enoyl-(Acyl carrier protein) reductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43639 all species →	OXIDOREDUCTASE, SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY (AFU_ORTHOLOGUE AFUA_5G02870)	Interproscan

Gene Ontology

No Gene Ontology signature was detected for XP_032241860.2. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032241860.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032241860.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

41TPM > 0

16Conditions

18.4Max TPM

9.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	13.83	18.39
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	11.22	14.96
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	15.04	16.90
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	8.84	9.32
whole 6 week old aboral regenerate · regenerate uncut	3	3	13.05	14.84
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	2.74	8.22
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	8.89	14.03
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	9.76	10.81
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	4.39	7.04
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	9.54	15.09
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	8.62	10.08
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	7.32	13.30
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	12.57	14.29
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	6.16	9.90
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	13.69	16.77
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	7.48	13.58

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	18.39
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	12.12
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	10.99
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	14.96
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	10.22
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	8.46
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	16.90
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	15.18
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	13.04
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	9.32
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.97
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.21
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	14.84
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	13.39
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	10.93
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	8.22
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	14.03
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	12.64
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	10.81
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	10.29
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	8.16
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	7.04
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	6.12
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	15.09
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	7.67
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	5.87
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	10.08
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.38
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	7.39
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	13.30
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	8.66
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	14.29
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	11.73
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	11.68
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	9.90
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	8.58
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	16.77
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	12.17
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	12.13
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	13.58
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	8.85
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.