Gene detail

Detailed information of XP_032241882.2 in Nematostella vectensis

Genomic Location: NC_064041.1:13006871...13012940
NR annotation: XP_032241882.2, glycosaminoglycan xylosylkinase [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032385991.2

ACATGTGCCACGTATTTTCAGTGACGCCTGGCGGAGATTTTCCATAACACTGGACCAAGAAAGAATGTTGTTTTTTGACCTTTTGGTATGGTGGAATCCAGTAGGATTTTCATGACATATTGCCTACGAAATTCTCCATAAAGATGAAGCTGAAAGATCGACTGATTTTTCTGGCGTGTGTTATCGTTCTTTTGGTACCGTTTCTTTGGCTGAGAAAAGCTGAGATGGCAGAACGAACGTTAGAGGCACAGGAAAGAAAAATCAAACTCCTAAAGTCTTCAGATCACTTAGACTTTAACAGCATAGACCACAACCACAATGGACTACCAGTGAGAAAACGTTTGAGGAGCAATCACAGAAGGGATTTAGGCCAAGATTTGGTCGAAAAAAAGTTAGAGACACAAGAAAAGCACAATAATTTAAAACAGGTGGAGGCTAGATCAGAAAATATCGacagtaaaaataataatgataatgatgatgatgatgataatgacataGAGGGAGATGATCCGTGGCAGCTATGGAAAGACATGGTTACATCTCGACATCTAACACCAAGCGGTAAACAAGAAGTCAATTTAATCTTGGATGCCCTTTCATACAAGCCAATAGTTGCTGCTGGTGTAGGTTATAAAGGAACACAGTTGAAAGCCACTTTGTTATTGGAGGGAAACCAGAAAGTAGTTTTCAAACCAGGAAGgTACTCCAGAGAGCATGTTATAAAGGGAAAGCCATATGATGGTTATGACAGACATAATGGGGAGATAGCAGCATTTCATCTTGATAGGGTCCTTGGCTTCAACAGAGCTCCCCCAGTAGCAGGTAGAGTGGTGGATCTACAGGATGAAATTAAACCTATTGCCGAGAGGAATCTGTTGCGtacattctttaaaaaagGTGGTAACACTTGTTTCTATGGTGTTTGTTACTACTGCAACAAAGAGGAGGCTGCCTGTGCTAACAAGACATCCATGGAGGGGTCTATGACAATATGGCTACCTCAAGGGTGGGCTCTGAGAAAGTGGAGACACCCTTGGCAAAGGACGTACAACAATAGAAAGGCATCGTGGGAGCTCGATAACAACCATTGTAAAAAGGTCATACAGCAGTCACCCTATGACCAGGGGCCACGCCTACTGGACATTATTGACACTGCCGTCTTTGACTTTCTTATAGGTAATGCAGACAGACACCACTACGAGACATTTAAGAAAGGAGATGACGAAGGCATGCTtgttcaccttgacaacgcgaaGAGcttcgGAAATCCTGATCACGACGAGTTATCGATTGCAGCACCCCTTTATCAGTGTTGTCAGCTTCGAGATTCAACATACAAGCGCCTGAAAGAAATCGCTAACAACAAAGTAAAACCTGTAGGCGAACTCCTCAAAGAGGCGACAAGCTCAGATGCGCTAGCCCCAGTTCTAACCGAGCCTCACTTCAAGGCGGTGACGCGGCGACTGTCGATTGTTATGGATATAGTAACGAGGTGTATCGAGAGAAACGGCCGGAGAAAAGTTATCAAGAAGGATGGGTTATAGGACAGTTCACTGCAATGCGAGGCGCACCGTACGTCGTCGTGGATACAGCTTCATGtggcaaagaaaaaaaaaggaagttgATCAAGTTGGATTGTAGGATAAGTCACATGCAAATAACGAAGGAGCAGAGTTTTATCGGAGTCCTGTGATTGGATGGTGCGAAGCTGTGCTTTACTTTTGCGTTTTTCTTGTGGATTCCTATGGCTGGCCGTGAGGTGCTGGGGAGAGCCAACCCGaccaccacaggaaacccaatcaGAAACTCGGGTAAGAACTCCTGGGTCGGGTTCCTggaaagcaggttaacgccAACCCAGAGataaataaggttgttatccaatcaaatgtcttGATAACCATATTTATCCGTGGATAAgtgctaacctgctttcgaGGAACCGGGCCCTGGGAGTTGCAGTTTCCGTAATCAAGAAAATGCTCGTTTTAGCGGCAAGTTTTCGGGGGTGGGGCTTATTTAATTTTACGTCCTAAAGGAGGGGTTAACTCGAAGCGGGGTGCCTATTACAAATTCAAACAGACTTCAGGttcatatgacaaccaaactgtTATATCTTTATCTTTCTTTCCAAGCATAAGACTAATAGAAATTCAAGCTAGATTATCTATCAGTAAAAACTTAACCAAGAGAAATTCCAATAAATAATTTGGTACGCGTCTTTCGGTTtttgattataaaaaaattgtaacaGTAACTTGTGGTTGGTAAAAAGCCTTGTGTTCGATCATTTGCCCATTTTGTGTGTAAGGGTGagggtttggggggggggcttatttgaagaaGCCGCTTATTTAATATCTTACGCCTTGGATGGAGGGTGCGTCTATCTGATGCTCTGCCCTTAAACGTTTATTTTCGGTATGTGGTCTATTCTATGGCTCAGAATTAACAAGTGCAACGGATTTGCATGTATAGAACGTTTCTTCTGGAAGAAGCGCAATTGACGACAATtataaaatcaaattattatatttctaaAATTAAGATATAATTCATATAAAAGTCAAATTATTAAAGTATTTTAATATTATGTGTAATTTTATTGTCCTTTACAATAAAATATCAGTCCAACTGAACCTCGAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75063	Glycosaminoglycan xylosylkinase OS=Homo sapiens OX=9606 GN=FAM20B PE=1 SV=1
Q8VCS3	Glycosaminoglycan xylosylkinase OS=Mus musculus OX=10090 GN=Fam20b PE=1 SV=1
Q5RH51	Glycosaminoglycan xylosylkinase OS=Danio rerio OX=7955 GN=fam20b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006682 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06702 all species →	Fam20C	Golgi casein kinase, C-terminal, Fam20	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024869 all species →	Family	FAM20	Interproscan
IPR009581 all species →	Domain	FAM20, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12450 all species →	DENTIN MATRIX PROTEIN 4 PROTEIN FAM20	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0016773 all species →	Molecular Function	phosphotransferase activity, alcohol group as acceptor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20825	FAM20B; glycosaminoglycan xylosylkinase	EC:2.7.1.-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032241882.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

35TPM > 0

16Conditions

6.8Max TPM

2.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	2	4.03	6.76
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	3.16	3.86
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	2.03	2.42
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	2.54	3.24
whole 6 week old aboral regenerate · regenerate uncut	3	3	2.02	2.55
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	1.87	3.60
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	3.48	6.09
whole 6 week old aboral regenerate · regenerate 36hpa	3	2	1.38	2.19
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	1.28	2.57
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	1.30	2.09
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	1.66	2.36
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	2.75	4.28
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	2.03	3.33
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	1.04	3.11
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	1.25	2.13
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.68	2.04

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	6.76
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	5.32
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.86
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.99
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.62
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.42
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.04
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.62
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.24
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.66
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.73
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.55
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.02
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.49
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	3.60
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	2.02
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	6.09
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.35
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.19
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	1.95
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.00
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.57
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.26
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.09
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.82
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.36
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.37
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.24
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.28
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.96
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.33
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.77
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	3.11
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	2.13
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	1.62
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	2.04
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.