Genomic Location: NC_064034.1:2048095...2057812
NR annotation: XP_001636412.3, desert hedgehog protein A [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5516378 |
| Transcript |
| rna-XM_032386108.2 |
| Protein |
| XP_032241999.2 |
| UniProt accession | Description |
|---|---|
| Q91610 | Desert hedgehog protein A OS=Xenopus laevis OX=8355 GN=dhh-a PE=2 SV=1 |
| Q91611 | Desert hedgehog protein B OS=Xenopus laevis OX=8355 GN=dhh-b PE=2 SV=1 |
| Q90419 | Tiggy-winkle hedgehog protein OS=Danio rerio OX=7955 GN=shhb PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001930 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01079 all species → | Hint | Hint module | Family | Interproscan |
| PF01085 all species → | HH_signal | Hedgehog amino-terminal signalling domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003587 all species → | Domain | Hint domain N-terminal | Interproscan |
| IPR001767 all species → | Domain | Hedgehog protein, Hint domain | Interproscan |
| IPR003586 all species → | Domain | Hint domain C-terminal | Interproscan |
| IPR009045 all species → | Homologous_superfamily | Hedgehog signalling/DD-peptidase zinc-binding domain superfamily | Interproscan |
| IPR000320 all species → | Domain | Hedgehog, N-terminal signalling domain | Interproscan |
| IPR001657 all species → | Family | Hedgehog protein | Interproscan |
| IPR050387 all species → | Family | Hedgehog Signaling | Interproscan |
| IPR036844 all species → | Homologous_superfamily | Hint domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11889 all species → | HEDGEHOG | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016540 all species → | Biological Process | protein autoprocessing | Interproscan |
| GO:0007267 all species → | Biological Process | cell-cell signaling | Interproscan |
| GO:0007275 all species → | Biological Process | multicellular organism development | Interproscan |
| GO:0001708 all species → | Biological Process | cell fate specification | Interproscan |
| GO:0005113 all species → | Molecular Function | patched binding | Interproscan |
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| GO:0005615 all species → | Cellular Component | extracellular space | Interproscan |
| GO:0007224 all species → | Biological Process | smoothened signaling pathway | Interproscan |
| GO:0010468 all species → | Biological Process | regulation of gene expression | Interproscan |
XP_032241999.2.Transcript abundance of XP_032241999.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
