Gene detail

Detailed information of XP_032242001.2 in Nematostella vectensis

Genomic Location: NC_064034.1:2044004...2057812
NR annotation: XP_001636412.3, desert hedgehog protein A [Nematostella vectensis]
Species abbreviation NVECT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032386110.2

TTATGAAGCGTTATCAGTCCAAGTTGACATTTTTATCAACCGGGTGCAGCAGATCTGCGAGATAGGACATCTCAAGGGTTCTACTCGCTCCCGTACGCGAAACACTTGTTGTTCCCGACTGGTTATTTTGCTAAGTGTTACGGGGTTTAGCCGCAGTGCGGGAGACTTGCTGTGCGCAACGTGAGGGCGTGCAGCGAACTCGTCATAGAGTCGTGTTTTGTTCGTGTTATTGAGCAAAACTGTTTATAAACTTTATAAGATGGCGAAGTCACTCGCACGAGGTCTGACGGTAGCCATACAAAATCTAAAGCAAGAAAGTTTACTGAGAGCGTAACAAGGCATGGGTCAACAATTCCCTTGCTTGTTAAGTTGCGGGATCgctctttttattttccaaCTGCTCATCCACGGAGCCGGGACGTGTGGACCGGGCAAGGCTGCCTTTGACAGAGATAACAGAGCCATTCCAATGAAGATCCGAGAACACATTCCTGACACGAGCGAAACTTCACTGCAAGCGAGTGGTCCTTCTAGGAAGATTAAGAGGGGATCTAACGGTTATAAGGAGCTCATCACGAATGCGGATCCCAATATCGTGTTCCGAGAGGATAAAGCGGGAAACAATCGACGCATGTCTAAGAGGTGTGAGCGCAAGCTTAAGATTCTGTCCTCGCTTGTGCGCAAAGAGTGGATCGGTGACGTGAAGGTCCGTGTTATTCGCGCGTATGATGATGGCACGAGCAAGAAAAGGCACCACGGACCTCACTCACTACACTTCTCAGGACGAGCGCTTGACATCACCACGTCAGACGAGAAGAGGGATAAGCTGCCCATGCTAGGACGGCTCGCGTATAGAGCGGGATTTGACTGGGTATACCGCGCAAAAGCTTACATCCATGCGTCCGTGAAATCAGACGACGAGGACGATTACAGGGAGAACACTGGCTGCTTTCCTGCCGCGTCAACTGCAAGACTCGCTACAGGTGAGCAGGTGCCTATGGTGGATTTACGACTCGGGGACAAGGTGGCCAGCGTGGATGACCGAGGAGGAATCATCTACAGTCCAGTTATCATGTTTTTGCATCGCAGCCCGGAGCTTATTATGGATTTCTTAAAATTCCGGACGGAAAATCAAACGGAGTTGGTAATTACTGCTTCACACCTTATCTACAAAATCAACAGACAGTCCAAACGGAAAGAGGCCTGTTTCGCTAAGGATGTTACGGTTGGAGACCTGGTCTTCGTCGGGGGTCGATCGTCTACAAAGAGTCTTTCCCCGGGGCGAGTGACAAGCGTTGAGCGGACAAGAAGCCGTGGTGTCTTTGCGCCACTAACACAAGCCGGCAATCTATTTGTGGACGATATTCTTGTGTCGTGTTATGCCATAACTTCCAGTGATAGCATCGCGCATTGGAGTCTTGCGCCTGTTAGACTCGTCGGTGCTATCTGCCCGCGGTGCTTTGACATCGAGTACAGCGGTATTCACTGGTACCCGCGTATTCTATTGACGATCTTCGGTAAGATTGTGGAATTGTGTGGAGGGTTTTTATAAGAATACGTCAGGCTGAGTATGTAGAGGTTGAGATGCACTCTCTCGCGTGTTCAGAAAGTGAAGGATACGCATGACCAACTCATTGGCATTTCTTTCAGCCCGACAGCttacttaaaaacatttgtcaATGTTACGAGAGAAAAGCTGAGACTAGAGAATCGACCGTTTCAAATCCATGTGGTAACTCGGTAATTAACAAGAGCCCAGAGTTCGGCGGTCCCAGGTTGACGTGCGTTGCCTGTAGATCAATGCGACTGCATCCATTTTAGCTAACAATGCTAATTAGGGTAATTATACGGTATGATTGGCACCCGGCGGAGTGCGTCTAATTGGCTTCTCGTTCAAATTGGATTCCGCGAGAATGTGAAAAGAACACATGATTTGCACGCGGTAATGTGGTTTATAGACGTCATTTGCTTTAAGTGCGTCGTAAGAAGTAGAAAAGTGGAATAAAATGTAACGCATGTCACATCGTACAATGTCACGGGCTTACTTTATGAGGAtgttttacaaagtgattccTTCGTCAAGCTCAATCAAAACGACGATACAAAACGTTCATGACAAGCGCCAGGTTACTGTGAGCCCTTGTGGTCGTAATGGAGGTcataaaatacagtaaatgtactGACTTTCTTTCAACCTGAAATTGCGCTGTCCGCTGTGCAGAGGTAACAGAAATTTGCGCTCTTTCCCGCCCTTCTCAAGTCAGCTATCCACCTATATCATCATTCACCTCCAATCACGAGGAGCCCATGCCCGCATCTGGAGGACTGATGCTAGGTTAATATGGTGCTAAAGACGcggaaaataatataaaacagACTGTGTTGGCTTTTATCAGTCTAACGGTACCTAGCATCTAGGCTTATTATAGGAAAATTACAATTTATGACTTACAGGGATTTCGTTTTGTATGTTTCACAAAAAGATAGACACTTCCGCACGGAGCAACCCGACTTTGTAAGGATTTTCCCTTGAGTCCCACATTTtgtaataatattttatttttatgtccaTTAATTATGTCACGAGCATTGACTCTTCGgaaacgaagaaaaaaaaaaactttgtagCAGCACTATGCACCGTAGCTAGGTTACTCAGGTAACTTAACGATCATGTATCTATTTATATTGTACCTTTTTAGAGCTTTTATCTAACATAAGACGATAACTCCTGGTATTAAATACACTGTCAAAAGAGGATGGTCTGGTTTTCTGTAATTATTAAGCTTTGAAAGAGATCTTGTCAGCCacactttttctgttgttttaAACCAATATAGAGTATGAGAATGAATCTCAAAAAGACCACCTAAAAACAATCCAATAAAACATACCGGAACAGCTTTCTCACACTTAGTACTTTGTCAGGGTTACCAAATGGTGCTGGCTGACTGAAGCTCTTAAGCGGTATCTAGAAAAAAGCCCGAAAACGCAACTGTTCTAACCGATCATGCACTTACCAAAGCAGTGTATAGAAACAAGGTTTATaaaagagtggttttcataagCCCGTCGAAAATACTCTAGCTCAGGTATCACTAATACACTATAATGTTCTTTCTTGTGCAGGCTTGACTTTAGACTGCTACTCTTTGTTTTACGGGCTTACGAAAATCACTCTACCTGAGTACCAAGGAGTTAGATAGAAACAAAAACGGGTGTTATCACTCGTGCAGAGGGGTCTAGTGTTCTCAGCGTGGAAGGTATACCATACTATTAGAAAGTACGAATCCCAGCCACTGATAATTCACTCTTATAGCACAACAAAACTAGTAGTACAAAAATACTGCTAGGGAATGGCCAACAGCTAGTCAAAGAGGAATATATTTAAGAATTTTTTAGGccttttatttgcattttaaaTTTTCACAATTGTCTCTATTTTCCCCTACGCACGAACTTTATCAGGGGACGCGCTGTGAAATGGGCTCCAGGGTTGAGTTCCTCTCACCCCTCTACTCTCGGTAATCTCGAGCAATTCTAAGCCCTCTACTCTAGGTAGAGTTTCCTAACTAACCTTTAGTTTATTAGCGCCCTCGAGTTATTCTCAGCCCTCTACTCTCGGTAGAGTCCCCTAACTAACTTTTAGTTTATTAGCGCCCTCGAGCAATTCTCAGCCCGGCCAGTGGGAATTATATTTTTGGAAAAGCCATTCATGTATATACCATAAAAAACaacatgaaaataataataaataagaaGGATAGTTAACATAGATAATGTTTGTCACTTAGCACAGTGGTGGTGTTTTTCGCGAGTGGTTGGGTGGGGTTGAGTAGAAGAACTACTAATTGTGGCGTTTACTAGATCGCGTAGCGCTAGACACAAGTTCAGAAATGTCCATaagtatataataaatatgcaTATATTGAAGCAATAAAGAGTTCAACATCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91610	Desert hedgehog protein A OS=Xenopus laevis OX=8355 GN=dhh-a PE=2 SV=1
Q91611	Desert hedgehog protein B OS=Xenopus laevis OX=8355 GN=dhh-b PE=2 SV=1
Q90419	Tiggy-winkle hedgehog protein OS=Danio rerio OX=7955 GN=shhb PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001930 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01079 all species →	Hint	Hint module	Family	Interproscan
PF01085 all species →	HH_signal	Hedgehog amino-terminal signalling domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003587 all species →	Domain	Hint domain N-terminal	Interproscan
IPR001767 all species →	Domain	Hedgehog protein, Hint domain	Interproscan
IPR003586 all species →	Domain	Hint domain C-terminal	Interproscan
IPR009045 all species →	Homologous_superfamily	Hedgehog signalling/DD-peptidase zinc-binding domain superfamily	Interproscan
IPR000320 all species →	Domain	Hedgehog, N-terminal signalling domain	Interproscan
IPR001657 all species →	Family	Hedgehog protein	Interproscan
IPR050387 all species →	Family	Hedgehog Signaling	Interproscan
IPR036844 all species →	Homologous_superfamily	Hint domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11889 all species →	HEDGEHOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016540 all species →	Biological Process	protein autoprocessing	Interproscan
GO:0007267 all species →	Biological Process	cell-cell signaling	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0001708 all species →	Biological Process	cell fate specification	Interproscan
GO:0005113 all species →	Molecular Function	patched binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0007224 all species →	Biological Process	smoothened signaling pathway	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032242001.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.