Gene detail

Detailed information of XP_032242023.1 in Nematostella vectensis

Genomic Location: NC_064034.1:1855367...1874611
NR annotation: XP_032242023.1, transmembrane protein 209 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032386132.2

gATGACCAGCGGTCTCACACCAGCAGTTGAGGAAATGGCGGACCAAATGACAACGTTTGGGCTCTAAACCCGAAATTTAAAATACAGCAAGGCCACTAGTTTTGGATTTACTGCACAGGAAAAAGGTTCTCATCTTAACTCGCAGCCAATATGCGAAGGCTTGCAAAAAGCCAAAGTCCGGTGGTTGAAGCGGCTTACAACCGTAGGCAAGTGACGAAGAAATCGAGATCTGCCTTCACGTGGGTTCTAGTTAACATCTCTCTCGCGGCATTCATCTTCTCCGATCTAATGTTTGGATCTATAAGTTACTATCTAGATGTCCATCACCCATACATCTGGTATGGAGaacTTATTCTAGCTGTGTGGTTCAGTGTTGGGTTCATTGTAGACCTGTTCTACTATCTTCAGCCAGTGATTTCACAGAACACCATCCTCCTCTCACCCAAGCAATGCAAGCTTCTGGGAGTCAGACAATCAGACGTAGGGTTCAAGttgaaatcccctgatgacatgCCTAGGGCCCCTAGCCACAGCGCACCCTCCACCCCAATCTCACCCTTCACAGGGTCAACCCCGCCCAGAAAACACAAGGTCACCCCACCAGGGCCCAGCAGTACAACTCCTGGCAGCTTCTCCCAAACACCATACCTCAACACAGCCACCCCTGATACCAGTCTTCGATCAAGGAGTGCCACACCCACTAGGTCACCATACTCTCCAAGTGATTGTATAAGCAGCCTGGAGGGGCTTACAGATTTTCTCAAAGAGCAAGAGAAAGAGGAGCTTTTACTCCAGAGAGtttccCCTGAATCCATAACCCCTGGGCGTGGTACCTCCTACTGGTCGCCATATCGGCAAGACTACACACCACCTCTTGGCGTTTACAGGATTGCTAGAAGGTCTCCTGATGTCAGTTCATCACATGATGATGGGGATTCAGGTTACTCTAGTACTAGGGCTGATGAAATCTGGAATAAGTTGGGCATCACACGTGCAGACCTGGATCACTGGACAGAAAACTGCCGTAAGTGGCTTTGTCAGACCATTCTGGTTCGACTCGTGGAGCAGATCGACTCTGTGAATGACGTTCTGTGTCGTATTGGGTGCCAGGAGCTGCAGATAGGAACGATAAGTCTTAGCTCACTACGACAAGTCGCTGTAACCAAAGCGGACCAGGTTCCTCAGTTACGCGCCATCATCCCTTATTTGGAGGCATCTACCAACCAAGAGTACCTCGTGCAGAGGATAAGAGAGCTCTCCAAGGGCGGGTGTCTTGGCGTCTATCGATGGAACTCGGGTGGAATGTTTCGCGGGAAACCTTGGGAACAAGACTTATTTGCTGATTCCCAGATCGTGATGCACCTTTTCTGTACCTACATGGACTCGAGGCTGCCTGCAGACCCTAGGTTCCCGGATGGGCGTACCTTCACAGGACTTCACTTCCTCAAGACACCTGATAAACCGGCTGATGCCAGGAAGAGCGACTTGTCCATCTACATGGCTCGTCTGCACCCGCCGCACTACAAGATCGTGGTCAAGGACGAAGTCTACGACATCCCAAAGGGCCGCAACAACCTTTTTCACGCCATCATCTTCTTCCTTCATCACATCAAAACCGAGCATTACGGGATGTTAGGGCGTGTGAATTTGGGCCTCTCAGGAGTAAACATTATGTGTATCATGAACAAGAAGTGAGCACATCCAGTGGGATACTCGACTGCGTCTATTGCGTGACATGGTCACGATCTGGCTCTAACAGATGGTCACGTTACACTACCACGACCTTACTCATGAGTCAATGCTAGTTATCCCAAAGACTCTAGGCTAGCATACTCCGGCCAAGTGATTATGGTTGATCTTTCTCTTTACTCAAGTCTCATGCTGcttcattttaaaatatattttgtatcGCGTTCACTATTTTGTTTACTGTGGAACTTTTAGCAAATAACTGAATAACGCTGGAACTCGACGTTACTGTATATTAACTAGGTTGTATTTCTGAATTATATGTTTTTCTATATAAGCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BRG8	Transmembrane protein 209 OS=Mus musculus OX=10090 GN=Tmem209 PE=2 SV=1
Q96SK2	Transmembrane protein 209 OS=Homo sapiens OX=9606 GN=TMEM209 PE=1 SV=2
Q68FR5	Transmembrane protein 209 OS=Rattus norvegicus OX=10116 GN=Tmem209 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005672 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09786 all species →	CytochromB561_N	Cytochrome B561, N terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019176 all species →	Family	Cytochrome B561-related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21780 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032242023.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032242023.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

40TPM > 0

16Conditions

17.4Max TPM

8.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	11.42	12.97
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	8.44	10.50
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	8.27	10.14
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	7.45	8.33
whole 6 week old aboral regenerate · regenerate uncut	3	3	7.87	8.20
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	2.61	7.84
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	12.71	17.41
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	11.80	13.12
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	6.76	10.58
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	8.19	9.27
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	8.61	9.03
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	8.15	13.59
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	9.19	14.43
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	9.57	14.74
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	11.39	13.83
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	2.78	8.34

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	12.97
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	10.65
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	10.64
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	10.50
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	8.22
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.60
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	10.14
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.58
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.09
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.33
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	7.27
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	6.75
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	8.20
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.94
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.46
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	7.84
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	17.41
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	10.57
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	10.14
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	13.12
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	12.69
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	9.60
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	10.58
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	9.69
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	9.27
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	8.30
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	7.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	9.03
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.64
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.18
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	13.59
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	10.87
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	14.43
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	13.15
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	14.74
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	13.97
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	13.83
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	10.18
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	10.16
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	8.34
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.