Genomic Location: NC_064034.1:2093800...2105996
NR annotation: XP_032242037.2, tubulin tyrosine ligase 3 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5516347 |
| Transcript |
| rna-XM_032386146.2 |
| Protein |
| XP_032242037.2 |
| UniProt accession | Description |
|---|---|
| B2GUB3 | Tubulin tyrosine ligase 3 OS=Xenopus tropicalis OX=8364 GN=ttll3 PE=1 SV=1 |
| Q1ECV4 | Tubulin monoglycylase TTLL3 OS=Danio rerio OX=7955 GN=ttll3 PE=2 SV=1 |
| A4Q9E5 | Tubulin monoglycylase TTLL3 OS=Mus musculus OX=10090 GN=Ttll3 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004986 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03133 all species → | TTL | Tubulin-tyrosine ligase family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR051437 all species → | Family | Tubulin tyrosine ligase-like monoglycylase | Interproscan |
| IPR004344 all species → | Family | Tubulin-tyrosine ligase/Tubulin polyglutamylase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45870 all species → | TUBULIN MONOGLYCYLASE TTLL3 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0015630 all species → | Cellular Component | microtubule cytoskeleton | Interproscan |
| GO:0018094 all species → | Biological Process | protein polyglycylation | Interproscan |
| GO:0070736 all species → | Molecular Function | protein-glycine ligase activity, initiating | Interproscan |
| GO:0036211 all species → | Biological Process | protein modification process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K16608 | TTLL3_8; tubulin monoglycylase TTLL3/8 | EC:6.3.2.- | Cytoskeleton proteins | ko04812 | deepkoala |
Transcript abundance of XP_032242037.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
