Gene detail

Detailed information of XP_032242140.2 in Nematostella vectensis

Genomic Location: NC_064043.1:2407647...2425932
NR annotation: XP_032242140.2, ubiquitin carboxyl-terminal hydrolase 4 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5516508

ATGGCGGGCGCAGTCAGCCAAGAAAATGGTGGCGAAAACGAAACTGCTAGCGACTCCTTGCCAGACTTAGAAACCCAGAAAAATGACATCAAAGAATTAATAAATACAACGCTACAAAAAGGTGACACTTGGTACTTGATTGACTGTCGTTGGTTCAAGCATTGGAAGAAATTTGTAGGATTTGACAGTTGGGATGTGTACGGTGCAGGAGAGGCAGTCAATAATCCTGGGCCCTTGGATAACTCAAACCTTTTTACAGATGACAGAGTAACACTTAAAGATCACTTGATAGACGAGCTGGACTATAATCTGGTACCAGAGGCTGCCTGGCATAAGCTTGTTTCCTGGTACGGCTTGGTAAATGATCAGCAGCCCATTTCACGGCAAGTAGTGGAGCATGGCATGTATGTGCGGCACTGCAAGGTGGAGGTTTACCTTATGGAGTTCAAGCTGTGTGAAAACTCAGATATGGACACTGTCGTCACCCAACAGTTCAGCAAGGGAGATACAATAGGTCACATTGTATCAACAATGAAAAATCTATTTAGCATCCCTGAAGAGTCAGAGACTAGATTGTGGAACAAGTACATGTCCAACACTTTTGAACTGTTGAGCAATATGGAACAATCTGTGCAAGATGCAGGACTGTATCAAGGGCAGACACTAGTTATTGAGCAGCAGAATGAAGATGGCTCTTGGCAACGGCAAAATACTAGGAGCTCCTATTCTTCATCGACGATCACCTCAAGTTCTGCAGATAATGGCTACAGCTCTTCCAATAACTCTTCCTCTTACAGTGGATATGGATCAGGGCGTTATTGGAGCAACTTGTATGACAACAAGAAGTCATATCGTGGCACCCCTGGACTTACAGGTCTTGCAAACCTGGGCAACACTTGTTTTATGAATTCTGGATTACAGTGCCTTAGCAACACCATGACCTTGACAAAGTACTTTCTGTCTAAAGAATATGTTGATGAACTCAACACTGACAACCCTCTTGGAATGAAAGGTGAAATTGCTAAGGCTTATGCTGACTTGTTGAATCAAATTTGGTCCGGGCAGTCATCTTCTATTGCACCTCGACAATTCAAGATGCAGGTTGGGCGATTTGCGCCTCAATTCTCTGGCTACCAACAGCAGGATTCTCATGAACTATTGGCTTTTTTACTCGATGGATTGCATGAGGACCTTAATCGCATAAAAATGAAGCCCTATATTGAGTTAAGGGATGCTGACGGCAGGCCTGACCAGGTTGTCGCCTCAGAGGCATGGCATAACCACAGACAGCGAAATGACTCCATCATTGTAGATATTTTCCATGGTTTATTCAAATCCACGTTAGTCTGTCCAGAATGCAATAAGATTTCAGTGACATTTGATCCGTTGTGCTACTTATCCCTACCGCTTCCTGTGAAGAAGGAGAGAAATATCGAATGCTTTCTGATCAAGAATGAACCCATGGAAAAGCCAGTTCAGTTTAAGCTGACAGTTCCTAAGATGGGAAGTGTTGCAGACATGTGCGCCATCTTAGGCAAGCAAGCAGGTGTGCCTAAAGACAAGCTGGTTGTAACAGATGTGTATAACAACCGTTTTCACAAGATCTTCAAAAACACTGAGTCACTGACAACGATAATGGACAGAGATGATATATTCATCTATGAGGTGTCAGAGAGAGTAGACAACCCGGAGTACCTTGTTCTGCCAGTCTACCAAAGGAAAAAGGGGGCAAGGCTTGCCAGTTACACGTATGGCAGCTCCAGCAAGGTTCTGTTCGGAATACCTCTTCTCATCTCTGTTCCGAAAAAGGGCCTCGTCTACAGTGAGCTCTACAAGATGTGTCTCAACAAGATGAGGCGGTACGTGACTGCCCCAGAGGAGAAGGATGATGATGTTGAAAATGGCGACGACAAGACAGACAAGACTGTTTGTAATGGACCCGATGTTGAGATGAATGAGGCTGAGAGCGGCGACAGTGACGCCGAGTCAGACGAGGAGCTAGAGAAAGCGTACAAGAATGTGAGCGTTAACGGTGACGAGGAAGAAGACAAGGCAGACACCGACGAAGAGACGCCCACTGTCACCAATCCCAAGACTGAAGTGACGGAAAAACCCACGAAGAAGACTCGTCTTTTCTCGCTCACGCTTGTCAACATGTATGGCAGCACAGACATGCACGCACTTGCAGACGATGGCAAGCCGCTCAAACTCAGCCATCAAAGTTATCTATCTCTCGACTGGACGACCGAGAAGAAGGAGAAGTACTACAACACCAACCTCTCAGAGGAGACAGAGGAGGACGAGAGCGTGGCCAGGAAGCCCACCCAGCGCAAGAGTGTAGTGCAACTAAATGACTGTATACAGCTGTTTCTGACCCGAGAGAAGCTCGGTGCAAATGACCCTTGGTACTGCCCTCAGTGTAAGAAACATCAGCAAGCCTCTAAGAAGTTCGACTTGTGGTGCTTACCGGAAGTGCTTGTGATCCACCTCAAGAGGTTTTCCTACACCAGCCTCTGGAGAGACAAAATTGATACTCTTGTCAACTTTCCTCTTTGTGGTCTTGATATGTCGGATTACGTCATCGGTAAGGATGGGCCCCCGCCGCTGTACGATCTGATCGGCGTCTCTAATCACTATGGAGGAATGGGCGGTGGACACTACACGGCTTACTGTCGCAACCACGAAGATGATCACTGGTATTCATATGACGACAGCAGCGTTAGTCAAATCAACGAGGAGCAGATTGTATCCAAGGCGGCGTACGTTCTGTTCTATAAGCGACGTTGTCCTCATGGCAACGGGCTAAAGAAAAGCGAGAAGGGGGTGGACTCTGGCACGGACGAGCGGATGAGCGAGACTGGGGAGGAGAGCGCTTCCGAGCAACGAGTGCCAGCCGATGAAGAGATGGACACCAAGTGA

Transcript

rna-XM_032386249.2

ccctggggacaAGTTGGCGGAGTTCCTGACGTaattccaagatggcgggcGCAGTCAGCCAAGAAAATGGTGGCGAAAACGAAACTGCTAGCGACTCCTTGCCAGACTTAGAAACCCAGAAAAATGACATCAAAGAATTAATAAATACAACGCTACAAAAAGGTGACACTTGGTACTTGATTGACTGTCGTTGGTTCAAGCATTGGAAGAAATTTGTAGGATTTGACAGTTGGGATGTGTACGGTGCAGGAGAGGCAGTCAATAATCCTGGGCCCTTGGATAACTCAAACCTTTTTACAGATGACAGAGTAACACTTAAAGATCACTTGATAGACGAGCTGGACTATAATCTGGTACCAGAGGCTGCCTGGCATAAGCTTGTTTCCTGGTACGGCTTGGTAAATGATCAGCAGCCCATTTCACGGCAAGTAGTGGAGCATGGCATGTATGTGCGGCACTGCAAGGTGGAGGTTTACCTTATGGAGTTCAAGCTGTGTGAAAACTCAGATATGGACACTGTCGTCACCCAACAGTTCAGCAAGGGAGATACAATAGGTCACATTGTATCAACAATGAAAAATCTATTTAGCATCCCTGAAGAGTCAGAGACTAGATTGTGGAACAAGTACATGTCCAACACTTTTGAACTGTTGAGCAATATGGAACAATCTGTGCAAGATGCAGGACTGTATCAAGGGCAGaCACTAGTTATTGAGCAGCAGAATGAAGATGGCTCTTGGCAACGGCAAAATACTAGGAGCTCCTATTCTTCATCGACGATCACCTCAAGTTCTGCAGATAATGGCTACAGCTCTTCCAATAACTCTTCCTCTTACAGTGGATATGGATCAGGGCGTTATTGGAGCAACTTGTATGACAACAAGAAGTCATATCGTGGCACCCCTGGACTTACAGGTCTTGCAAACCTGGGCAACACTTGTTTTATGAATTCTGGATTACAGTGCCTTAGCAACACCATGACCTTGACAAAGTACTTTCTGTCTAAAGAATATGTTGATGAACTCAACACTGACAACCCTCTTGGAATGAAAGGTGAAATTGCTAAGGCTTATGCTGACTTGTTGAATCAAATTTGGTCCGGGCAGTCATCTTCTATTGCACCTCGACAATTCAAGATGCAGGTTGGGCGATTTGCGCCTCAATTCTCTGGCTACCAACAGCAGGATTCTCATGAACTATTGGCTTTTTTACTCGATGGATTGCATGAGGACCTTAATCGCATAAAAATGAAGCCCTATATTGAGTTAAGGGATGCTGACGGCAGGCCTGACCAGGTTGTCGCCTCAGAGGCATGGCATAACCACAGACAGCGAAATGACTCCATCATTGTAGATATTTTCCATGGTTTATTCAAATCCACGTTAGTCTGTCCAGAATGCAATAAGATTTCAGTGACATTTGATCCGTTGTGCTACTTATCCCTACCGCTTCCTGTGAAGAAGGAGAGAAATATCGAATGCTTTCTGATCAAGAATGAACCCATGGAAAAGCCAGTTCAGTTTAAGCTGACAGTTCCTAAGATGGGAAGTGTTGCAGACATGTGCGCCATCTTAGGCAAGCAAGCAGGTGTGCCTAAAGACAAGCTGGTTGTAACAGATGTGTATAACAACCGTTTTCACAAGATCTTCAAAAACACTGAGTCACTGACAACGATAATGGACAGAGATGATATATTCATCTATGAGGTGTCAGAGAGAGTAGACAACCCGGAGTACCTTGTTCTGCCAGTCTACCAAAGGAAAAAGGGGGCAAGGCTTGCCAGTTACACGTATGGCAGCTCCAGCAAGGTTCTGTTCGGAATACCTCTTCTCATCTCTGTTCCGAAAAAGGGCCTCGTCTACAGTGAGCTCTACAAGATGTGTCTCAACAAGATGAGGCGGTACGTGACTGCCCCAGAGGAGaaggatgatgatgttgaaaaTGGCGACGACAAGACAGACAAGACTGTTTGTAATGGACCCGATGTTGAGATGAATGAGGCTGAGAGCGGCGACAGTGACGCCGAGTCAGACGAGGAGCTAGAGAAAGCGTACAAGAATGTGAGCGTTAACGGTGACGAGGAAGAAGACAAGGCAGACACCGACGAAGAGACGCCCACTGTCACCAATCCCAAGACTGAAGTGACGGAAAAACCCACGAAGAAGACTCGTCTTTTCTCGCTCACGCTTGTCAACATGTATGGCAGCACAGACATGCACGCACTTGCAGACGATGGCAAGCCGCTCAAACTCAGCCATCAAAGTTATCTATCTCTCGACTGGACGACCGAGAAGAAGGAGAAGTACTACAACACCAACCTCTCAGAGGAGACAGAGGAGGACGAGAGCGTGGCCAGGAAGCCCACCCAGCGCAAGAGTGTAGTGCAACTAAATGACTGTATACAGCTGTTTCTGACCCGAGAGAAGCTCGGTGCAAATGACCCTTGGTACTGCCCTCAGTGTAAGAAACATCAGCAAGCCTCTAAGAAGTTCGACTTGTGGTGCTTACCGGAAGTGCTTGTGATCCACCTCAAGAGGTTTTCCTACACCAGcctctggagagacaAAATTGATACTCTTGTCAACTTTCCTCTTTGTGGTCTTGATATGTCGGATTACGTCATCGGTAAGGATGGGCCCCCGCCGCTGTACGATCTGATCGGCGTCTCTAATCACTATGGAGGAATGGGCGGTGGACACTACACGGCTTACTGTCGCAACCACGAAGATGATCACTGGTATTCATATGACGACAGCAGCGTTAGTCAAATCAACGAGGAGCAGATTGTATCCAAGGCGGCGTACGTTCTGTTCTATAAGCGACGTTGTCCTCATGGCAACGGGCTAAAGAAAAGCGAGAAGGGGGTGGACTCTGGCACGGACGAGCGGATGAGCGAGACTGGGGAGGAGAGCGCTTCCGAGCAACGAGTGCCAGCCGATGAAGAGATGGACACCAAGTGACTTCGGTTTGCAGAATGACCCCTAACCACGAATTCTTCAATGGCTATTTTGTTGGCGGTTGTCAATGGTTGCACGTTAATCATGGCGGATTTGCTGGTCAAATATTGCTTATTGCTGGTTGCGCTTCACCGCTACACAATATTCTCAAGTTATAAACGGCTCTGCTGCATCTATTCTCTATATAATGTGTCACTTTCCTCGATCAAGTCTCTACCCAACTATGAGAACAACTCCTACCCCTACCACGTGATATACTGAAAATGATACGGCACACCTTGAGACCTTGCGAGATAACTTATTATTTGCGTAAAACCAAGAGATACCAGTAGGTCTTCTGCAGCAGACCTCCGTATAAAACCCTCCCCTTAGATTTAATAACTGCAATTCGTTGACAATAATTCTAACCCCCACCCACCTCTTGGTGCTCGACGGGAAGTGTTTTGTTTCGATTTCCAAACTTGCtgattaattatttttgtataaaTTCACTGTTTTTGACTTTTGGCAACCATAGAATCGCCTTGTGGTTTGAACCTATGTTATGCCCTACTGCCCAGGCAAATAAAGAAATTAGGTTCGAGTATGAAAGAAACTGGCTGGACCAAGTATTGAGTGCTTTACTGGGCTTAGGCACGATGGAAGCGTTCCCAATTGCTACCCGCGCTTTAATGTATCAGTGTATCCATAGACTTATGGAATATTTAAGTAGATAAAATTTACTGTACAAATTCTAAGCAACAATACCATTTATTATAAGCTCTGGCTtaaattgtgttttttataTGTCGAATAAACAGTGCAAAAATTgaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35123	Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus OX=10090 GN=Usp4 PE=1 SV=3
Q13107	Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens OX=9606 GN=USP4 PE=1 SV=3
A6QR55	Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus OX=9913 GN=USP4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000960 (this species only)
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF14836 all species →	Ubiquitin_3	Ubiquitin-like domain	Domain	Interproscan
PF06337 all species →	DUSP	DUSP domain	Domain	Interproscan
PF14533 all species →	USP7_C2	Ubiquitin-specific protease C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006615 all species →	Domain	Peptidase C19, ubiquitin-specific peptidase, DUSP domain	Interproscan
IPR050185 all species →	Family	Ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR035927 all species →	Homologous_superfamily	DUSP-like superfamily	Interproscan
IPR018200 all species →	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR028135 all species →	Domain	Ubiquitin-like domain, USP-type	Interproscan
IPR029346 all species →	Domain	Ubiquitin carboxyl-terminal hydrolase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21646 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032242140.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032242140.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

41TPM > 0

16Conditions

21.4Max TPM

10.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	11.77	15.11
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	7.82	9.06
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	9.52	10.34
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	16.92	21.45
whole 6 week old aboral regenerate · regenerate uncut	3	3	7.93	9.82
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	12.89	21.20
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	7.86	13.85
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	11.72	13.28
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	8.38	14.25
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	13.41	16.02
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	9.60	11.71
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	14.27	20.64
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	11.65	12.12
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	7.00	14.02
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	7.07	11.55
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	3.59	10.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	15.11
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	12.34
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	7.86
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	9.06
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	7.44
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.96
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	10.34
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	9.74
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	8.48
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	21.45
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	17.38
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	11.94
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	9.82
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.55
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	6.41
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	21.20
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	17.46
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	13.85
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	9.73
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	13.28
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	11.98
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	9.91
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	14.25
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	10.89
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	16.02
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	12.31
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	11.90
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	11.71
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	9.16
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	7.94
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	20.64
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	12.53
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	9.66
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	12.12
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	11.87
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.96
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	14.02
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	6.99
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	11.55
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	9.66
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	10.78
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.