Gene detail

Detailed information of XP_032242168.2 in Nematostella vectensis

Genomic Location: NC_064043.1:2636087...2646973
NR annotation: XP_032242168.2, motile sperm domain-containing protein 2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032386277.2

GGAATAATTTCGCTCAGCTTTCGGAATCTCGGAGCTCTTCCGAATTCGACCGGAAAGAGGAAAGCAGTAATGGCGGACGATGAGACCGCGCATGAAGCAAATCGAATCGCTGAGCTTCGTCGAAGGTTTTTCCTAGAAAACGATGCAGTGGATAAGTTTGATGAGCGAGACCTTATAAGGGTGAGACAGGATGATCTTTGGCTGCGATGTTTCATACGTGCTCGCAGTCAAGATGTCGATAAAGCTCTAGAAGCCCTGGTCTTTTGTTTAGAATGGAGAAAGACATTTGGACTTAATGATATAACTGAAGACAACCTGAACAGAAAGCTTTTTGAAAGTGGATTTCTTTTTCCACACAATATTGATAAAGATGGCAACACTATCGTGCTATTTGTTGGAAGAAACCATAAGAAGGACCCCCAGCAGCATCATGAGATGAAGCGCTTCCTGGTTTTCCTTCTagaaaaacatAGAAAAATGTACCCAAGCAGAAAAATCAATTTGTTGTTTGACATGCAGGAGACAGGACTTGCAAATATGGATATGGAGTTTGTCAAATTTATTATCACATGTTTTACAAACTACTACCCCAATACTCTTTCATGGCTGTTGGTCATTGAGTTACCGTGGATATTAACAGCTGCCTGGAAAATTGTGAAAACTTGGCTGAGTCCTAATGCTGTTCGAATTATAAAatttgtcTCCAAAGATGCACTACATGAGTATATTGACAGAGAACAATTACTGACATCACTAGGAGGAACTGACACATTTGAATACACATATCCTTACGCAGAGGAAGATATGGGGCTTGGCCCACCAGAAAGAAAAGAAGATCTTCAGCCAAATAATAATGATGCTGTTGTTGAGAATGGGAGTGTTGAGGTGACGTCAGATGAGACTGGCCTAGTACTAGATGAAGCTGACACAGACTTATCTAGGAAGgTCACATTCGAGGAAGAACATTTTGCCCACCACACACCCAATAGTCCTTTCACTTTGATTGATGATGAACCGACACAAagagccaaacaaatcaaccCAGCCATTCAACCTGGGAATTATCTCACCATCCGCCCTGCCGAGGAGCTTGTATTCATTGGCTCAATGTCGAGTGCAGAGATTCTGCAAACCCTGACTCTCAAGAATACGTCATCAACACAAGTAGCATATAAGGTCAAGACGACTTCTCCTGAGAGTTACCGGGTACGACCCAGTTCAGGCGTCATCAACCAGGGGTCATCTGCAGAAGTCAGTGTCTATTTACAACCAGGTTTGGCTACCACCGTTAGTCGAGACAAGTTTCTTGTGATGTCAATGAGGGTAACTGGTGCTAACACTAATGCCGAGGTCGCATCACTTTGGAAAAAAGTTCACAAGAGCAGCATTATGGAGCACAGGTTGCGCTGCAAATTTATGACGTCAGAACAGTGCGACACCCATGATGCAATTGGGCTTAGTCAGTTAGAGTCAAATGATACAGCCGACAAACACAATACTGTCTCATATAAACAGATTCAAGCAATTGAGAAAAAGATCGACCAGTTGTACCGCAAAGTCTCTTACATAGAAGAAGGTCTTCAGGTGTTCATCAAAGTTCAGCTTGCCCTTTTCTCTGGGATGGTGATTCTGTTTGCTGTCGTATTTTACTATGCCATGTATCTCATGCACTAGTCACACATACCAAACCTACTAAAAGCACCTTTTAATGCTGCCGCATACTGTTATCATGCCCCCTTCTCCTAATCTTATGATGCTATGCGCTTTCCTAGCTGTAGCTAGGGAAAAGCGTCATAACACAACCgcaaaatgtgaaaaaagcGTCTTTCTCCTTGTTTTGTCGCGCCATTTTTACGCTATGCTCTCTTAAAATGTATATCTGATGCGCTTATCACACACATTGTAGATAAGACTCTTTCTAAATTTATATTGTTAACCAGCCGCCGTGTGCCACGATCCAAGATCCTCAAATACCGAATCTTTGTCTTGCGTATCGCTTTTCCgtgaaggggcgtggctaaaTTTAATTTTGACTAAAGAGGTCGTCACCCCTGTTTTAAttactgtattattttatatataaatatatttttcgaTGGAATGTGATTTTACAGAAACTgcaattactgtaagtaattcaTATTAGGGCCCGTGAACTGACATCATTTCCCTAACCCAAATCTTACATGAAATTTCACATGACTTACTGGCTTAGAGTTGTCTTCGAGGGGAGGAGCTTTTTTTAGTTTAGCAACTTGATGAAAGAAGAGCCATCTGTACACAGGCTACCCGCTGCATCCGGGTATGACTAGATGGATTATTGGGAAGTTCAGataaaattaatattaattaaaaaCCGTTTTCAAGTAATAAAATGTAAAGAAAAATCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CWP6	Motile sperm domain-containing protein 2 OS=Mus musculus OX=10090 GN=Mospd2 PE=1 SV=2
Q8NHP6	Motile sperm domain-containing protein 2 OS=Homo sapiens OX=9606 GN=MOSPD2 PE=1 SV=1
A5GFS8	Vesicle-associated membrane protein-associated protein B OS=Sus scrofa OX=9823 GN=VAPB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003758 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00650 all species →	CRAL_TRIO	CRAL/TRIO domain	Domain	Interproscan
PF00635 all species →	Motile_Sperm	MSP (Major sperm protein) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001251 all species →	Domain	CRAL-TRIO lipid binding domain	Interproscan
IPR036865 all species →	Homologous_superfamily	CRAL-TRIO lipid binding domain superfamily	Interproscan
IPR053012 all species →	Family	Endoplasmic reticulum-organelle contact domain-containing protein	Interproscan
IPR008962 all species →	Homologous_superfamily	PapD-like superfamily	Interproscan
IPR000535 all species →	Domain	Major sperm protein (MSP) domain	Interproscan
IPR036273 all species →	Homologous_superfamily	CRAL/TRIO, N-terminal domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46384 all species →	MOTILE SPERM DOMAIN-CONTAINING PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0012505 all species →	Cellular Component	endomembrane system	Interproscan
GO:0140284 all species →	Cellular Component	endoplasmic reticulum-endosome membrane contact site	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09229	ZKSCAN; KRAB and SCAN domains-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032242168.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

38TPM > 0

16Conditions

12.7Max TPM

7.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	10.87	12.66
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	7.34	9.92
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	7.29	7.50
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	8.71	10.97
whole 6 week old aboral regenerate · regenerate uncut	3	3	7.25	7.60
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	2.80	8.40
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	6.54	11.53
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	9.02	11.48
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	5.94	9.10
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	7.38	8.49
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	8.58	9.48
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	7.03	11.44
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	8.90	10.21
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	4.20	12.60
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	7.23	12.06
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	3.31	9.93

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	12.66
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	11.91
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	8.02
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	9.92
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.41
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	5.70
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.50
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.36
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.01
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	10.97
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	7.80
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	7.36
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.60
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.30
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	6.83
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	8.40
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	11.53
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	8.09
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	11.48
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	8.56
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	7.01
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	9.10
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	8.72
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	8.49
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	7.53
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	6.11
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	9.48
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.73
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	7.52
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	11.44
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	9.63
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.21
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.10
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	6.38
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	12.60
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	12.06
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	9.63
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	9.93
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.