Genomic Location: NC_064043.1:3022185...3026882
NR annotation: XP_032242202.2, probable hydrolase PNKD isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5516422 |
| Transcript |
| rna-XM_032386311.2 |
| Protein |
| XP_032242202.2 |
| UniProt accession | Description |
|---|---|
| A7YY46 | Probable thioesterase PNKD OS=Bos taurus OX=9913 GN=PNKD PE=2 SV=1 |
| Q69ZP3 | Probable thioesterase PNKD OS=Mus musculus OX=10090 GN=Pnkd PE=1 SV=2 |
| Q8N490 | Probable thioesterase PNKD OS=Homo sapiens OX=9606 GN=PNKD PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004231 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16123 all species → | HAGH_C | Hydroxyacylglutathione hydrolase C-terminus | Family | Interproscan |
| PF00753 all species → | Lactamase_B | Metallo-beta-lactamase superfamily | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017782 all species → | Family | Hydroxyacylglutathione hydrolase | Interproscan |
| IPR036866 all species → | Homologous_superfamily | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | Interproscan |
| IPR001279 all species → | Domain | Metallo-beta-lactamase | Interproscan |
| IPR032282 all species → | Domain | Hydroxyacylglutathione hydrolase, C-terminal domain | Interproscan |
| IPR035680 all species → | Domain | Hydroxyacylglutathione hydrolase, MBL domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11935 all species → | BETA LACTAMASE DOMAIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004416 all species → | Molecular Function | hydroxyacylglutathione hydrolase activity | Interproscan |
| GO:0019243 all species → | Biological Process | methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
XP_032242202.2.Transcript abundance of XP_032242202.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
