Detailed information of XP_032242223.2 in Nematostella vectensis

Genomic Location: NC_064043.1:3378796...3410299
NR annotation: XP_032242223.2, pericentriolar material 1 protein isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8AV28Pericentriolar material 1 protein OS=Gallus gallus OX=9031 GN=PCM1 PE=2 SV=1
Q9PVV4Pericentriolar material 1 protein OS=Xenopus laevis OX=8355 GN=pcm1 PE=1 SV=1
Q15154Pericentriolar material 1 protein OS=Homo sapiens OX=9606 GN=PCM1 PE=1 SV=6
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002504 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15717
all species →
PCM1_CPericentriolar material 1 C terminusFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR024138
all species →
FamilyPericentriolar material 1 proteinInterproscan
IPR031446
all species →
DomainPericentriolar material 1 protein, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14164
all species →
PERICENTRIOLAR MATERIAL 1-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005813
all species →
Cellular ComponentcentrosomeInterproscan
GO:0005814
all species →
Cellular ComponentcentrioleInterproscan
GO:0007098
all species →
Biological Processcentrosome cycleInterproscan
GO:0034451
all species →
Cellular Componentcentriolar satelliteInterproscan
GO:0034454
all species →
Biological Processmicrotubule anchoring at centrosomeInterproscan
GO:0035735
all species →
Biological Processintraciliary transport involved in cilium assemblyInterproscan
GO:0036064
all species →
Cellular Componentciliary basal bodyInterproscan
GO:0060271
all species →
Biological Processcilium assemblyInterproscan
GO:0071539
all species →
Biological Processprotein localization to centrosomeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K16537PCM1; pericentriolar material 1 protein-Cilium and associated proteinsko03037deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032242223.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples
43TPM > 0
16Conditions
16.6Max TPM
10.3Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole 6 week old aboral regenerate · regenerate 96hpa 3 3 13.18 15.20
whole 6 week old aboral regenerate · regenerate 144hpa 3 3 9.81 13.25
whole 6 week old aboral regenerate · regenerate 0hpa 3 3 8.26 9.83
whole 6 week old aboral regenerate · regenerate 2hpa 3 3 10.30 12.88
whole 6 week old aboral regenerate · regenerate uncut 3 3 9.08 10.31
whole 6 week old aboral regenerate · regenerate 4hpa 3 2 7.78 11.87
whole 6 week old aboral regenerate · regenerate 120hpa 3 3 12.23 13.11
whole 6 week old aboral regenerate · regenerate 36hpa 3 3 13.52 16.55
whole 6 week old aboral regenerate · regenerate 24hpa 3 2 8.32 14.25
whole 6 week old aboral regenerate · regenerate 20hpa 3 3 13.12 14.39
whole 6 week old aboral regenerate · regenerate 16hpa 3 3 9.92 11.86
whole 6 week old aboral regenerate · regenerate 72hpa 3 3 14.16 16.62
whole 6 week old aboral regenerate · regenerate 60hpa 3 3 12.85 13.21
whole 6 week old aboral regenerate · regenerate 48hpa 3 2 8.69 14.50
whole 6 week old aboral regenerate · regenerate 8hpa 3 3 10.47 11.60
whole 6 week old aboral regenerate · regenerate 12hpa 3 1 3.89 11.68

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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