Gene detail

Detailed information of XP_032242237.1 in Nematostella vectensis

Genomic Location: NC_064043.1:2834117...2842283
NR annotation: XP_032242237.1, ankyrin repeat and SOCS box protein 13 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032386346.2

TCAGTGCGTATATCATCATATATATCTTAGAGCGGCAGTTTCAGGGctgtttttgtcaaatctcgtgctaaaaaaaaaacccttcttGTGGGTACCCCCCCTAAGGATTTGGCACGCTACCGGGAGCGAGCGCTTAGTCTAGACTCGGACTGTGTCATGGCGCTCGAGAGCTCATGAGAACTGCGTTCGCAGAGTTACAACATGGGAAACTCGCCCCCAACCAGGCGGGAACAACTAGATACTATGAGTCCTGAAGCGCTGGTTTGCCGTTTAAAACGGGCTGCGTACAAAGGCTCTAAAAAAGACCTTCGAGAACTCTTAAAAGCTGGAGCCCCGATAGATGGCTGCCATAAATACGGCAAAACTGCTTTGCATGAGGCTGTGAGGCACGGCCAGTTTCGCTGCGTGGAAATTTTACTCAAACACAACGCCAATGTGAATATAGCAACGTACGACGGTTTAACGCCGCTTCACGAAGCTTCTGAGCAAGGATTTTCGGATTGTTTGGCCGCACTGATTGAGCAAGGCGCTCACGTAAATGCTGCCACTCGCTCAAACTGGACGGCGGTTCACTACGCCGCACGGAACGGTCATTTCGAGTGCTTGGAAATGTTACTTAGGCACGGTGCACTAGTCAATGCTACCGCTAATGGTGGCTGGAGACCTTTGCATGTTGCTGTAAGGCATGGACATACGAATTGTGTGAAACTATTGCTGAAATACAACGCAGAAGTTGATCCGCCGCTCGTGCCTGCATGGAGGATTTTGCAAGTTCCACTCCACCACGCAGCTGAGTATGGTCACCTCGCATGTTTGGAGGCGCTATTACATCAGGGCGCTGATGTGAATTCCAGTACCCCTGAGGGGTGGACTGCGCTACATTCTGCCTCCCTGTATGGGCATACATCTTGTGTTGAAGCACTAATAAGATATGGAGCTAATGTGGATGCGAAAACAATTTGCCTGACACAAGGGACGTCGTACGACGACACTCCACTACACCTGGCGGCAAGGCACGGCCACTCGTACTGCATGAAGAGACTCATTCAGGCAAATGCCAATTTATGGACGAAAAATTGCTTAGGCCTTACACCCGAGCGATTTATTACGACAGACTATAGACTACGGGAATGGGTGGAAAATATACAAAGCCAGCCGCGCTCTTTACAGCTGCAGTGCTCTGCTAAAGTTAGGACTTATTTACAGCCGGACAAGACTCGGAATGCACTCAAATTGCCTCTACCCGGACATCTACTCAGACTTGTGTTATTTGAACAAGATGTGAAGATTCTATAGCATTTGCTAAGGCAAGATGTTACGGCCCTATAGCAATTGCTAAGGCAAGATGTTAGGATTCTATAGCATTTTCTAAGGAAATATGTTAGGATTCTATAGCATTTTCTAAGGAAAGATGCTAGGATTCTATAGCATTTGCCAAGGCAAGATGTTACGGTTCTATGGTAATTGCTAAGGCAAGATGTTAGGATTCTATAGCATCTTCTAAGGAAAGATGTTAGGATTCTATAGCATTTGCCAAGGCAAGATGTGAAGATTCTATAGCATTTGCTGAGGCAAGCAGAGTCTCCACCACACGTAAGCCACACGATGCTAGATCGGTAAACCCTAAGGGTCGAAGCTGTAAGTAATATTACAGTTTTTTCTATGAATGGGTACCACAAATGATCAAGGGACATCCCGCTCCTGCTGTAAGGAAAACCTCGTGGAGAAAAGGGGATTCTTGATAGGAATTGAGTGTAATTGGGTATATTTTTACGAATTCTATAGTCAATGCCTTATTGGATCTACTCTCTTTCTGAATTACTTTAGGCCTTGTCGCCACACATATCTCTTTCTGTCTCCTTTTGGAGATTCGTTGCTTACGCCACGTGTGTTTTCACCTCCTGCTCTCCGCTATTTCCGATCGCACTTCTAAATCTAGCACGGTATGGGTGTGACCCTAGCAGTTTCCCCGTGTCAGAGATGATTGATTCATTAAGGAAATGGATGTTGTTGGGTTTCTCGTTTAATAAGTACAGTACAACCCTGTTTCTCCATAGACGTGATTTCTAGCCAATCAGGCATTCCGCCTTCTGCGTTCTCGGTGGTGATAGTCGAAGTTTAAAGTGATAGCCCCTAAATCTCTTACCGTCTCATAACTACTGAGTAGTGTCATCTCGTAGACATGCCGTAGAattgttcgttttttttttttttatagctttTCAATTTCAATGGCTTGACTCAAACGTCAAGCGCACTAATACCTAGTGACTGCTGAATGGCTTTCAGAGCTTCGAAGCAGTTGAATGGATTGCGTGTTTGTATTGACTGCGAAATGGCTTTCCCTTGGCGCCGAGCGCGCGCGCAAATCTTTGGAATCCCATTTGGCGTTTTGTTTGCGCGGTTGAGTGGTTTTCTTGGGGCAGTTGTCAGGATGAGTAATAGGCCGCCAGCCATGCGGGAACCGCTAGGAACAGGCTAGTGCGCGACTCCTGTCAGCCTGAGCAAATAGCCGAGAGATCAGGGGGTGAATGAGATTGGCTTTGCTCTTAATCCACTGAAGCTGGCACCAATTTCAAGAATACACTATCACTACAGTCAATTTATTTTACTTATAAGAGGATTTTCCCGTTTTTTGGCCTTTACAAATTcttcattgtttttgtttagttGAACAATTTTTTATGCCCATTTATTTGGGCAGCCGTCATTTTTGCAAACCAGTCACACTGATGAGAGCGGCGAAACTCAGATTCAGAGTAAATCCATTTAGAATTCACGTCTAGCATAAAGTACgcatcaaaaaagtgaaataGAAATTGAGAATATGAGGAAAAGACTTTACTTGTCCTTCGCTGTCTTCTTGCTAGATTGAATCCCAGTCCCTTCAGAATCGTCACATCTCCGAAAGGACGTCGCGCTAAAAGTATCTCTACAGAAAATATATTCCGAATTATGTTTTGTATGATATTGTACAGTAGTTCAAGAGATAAAACTTGAATTTCACCA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008801 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR050842 all species →	Family	Cul2-RING E3 Ligase Substrate-Recognition Fem-1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24173 all species →	ANKYRIN REPEAT CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032242237.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032242237.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

45TPM > 0

16Conditions

25.4Max TPM

14.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	19.72	25.38
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	12.55	16.94
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	19.29	22.67
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	12.71	13.74
whole 6 week old aboral regenerate · regenerate uncut	3	3	11.49	11.68
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	8.51	14.53
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	18.14	24.05
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	15.16	17.51
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	16.73	18.21
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	14.95	16.97
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	15.85	16.47
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	18.87	24.01
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	14.12	16.70
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	11.46	18.35
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	16.85	19.38
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	9.88	15.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	25.38
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	17.46
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	16.33
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	16.94
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	10.88
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	9.83
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	22.67
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	20.30
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	14.90
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	13.74
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	13.39
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	11.01
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	11.68
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	11.56
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	11.23
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	14.53
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	11.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	24.05
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	16.02
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	14.36
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	17.51
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	14.73
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	13.23
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	18.21
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	16.30
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	15.67
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	16.97
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	16.17
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	11.72
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	16.47
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	15.91
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	15.17
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	24.01
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	17.68
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	14.92
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	16.70
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	16.11
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	9.55
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	18.35
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	16.04
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	19.38
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	16.22
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	14.93
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	15.05
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	14.60
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.