Gene detail

Detailed information of XP_032242276.2 in Nematostella vectensis

Genomic Location: NC_064037.1:11119971...11127106
NR annotation: XP_032242276.2, microprocessor complex subunit DGCR8 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032386385.2

AATGTCATTGAAATAATGATTAGGTCAAATAGGCGTAGttttttattactattttCTATCAATTTGGCAAATAAAAAACAGAATTATTAAGAAGAACTAAAATAGTGTTCAgattgggatacctgtgcttTGTTGTTACCAACGAAAAAGTAAAagttgtataaaaaaaatgttagagTTCGAATGAATGTCGCGTACAAACAAGGAAATACGTAGAAAAATGTTCAACAGTGTAACTTTTATAGTTTCTAGAACTTGATTACTTATTTTAGCCCCGGAGAAGCACAACTACTGAGCGGTTTTGAAGAGATCGCCGTTTAAAATGATGAAACTTTGACAATAGTTTTTCTATGCCTCGTTGTTTGAATCTTTTGCCCGATGTTTGGTCCGGGAAAGAGAAAGCTGTCAGCTGTCTGCGAAGAATCGGAGACTTTACAATGCAAACGACAATTCGATATCAAGAATGGAAGCAATTTTATGACCTTTGAGGAAAGCGGCGGAAATTCCTTAAAAGACGAATACCAAGACATGGAATTACGAGATTCACTGCTGGACGGTGCTTTACACGATTCCGATGGCTCAACTAATGACGTTGTAATCGACGAACCAATCCTTTGTGCTGAGAAACCGACTGAAGATAGAATAGTTATCAAAATGAACGGCAAACTGCCAAATCTATCCCTACCTGATGGCTGGCTGGCCTTAAACCATCGCAGCGGTGGTATCATCTATCTACACCGTCCCACCAGAGTATGTACATGGTCTCGCCCATATCACATTGGATCTGGCAGCGTCAGGAAACATGATATCCCTGCTGCAGCAATTCCGTGCTTTCATCAGATGAGATCTCTTGCTTGTCAATCCCCTGAGGACTCTGGACTTCCCCCAGATAAGGACAATGTGCTAACAACTCTAAATACAACATGGAATGAAAACAATGGCTCAACTGATGATAAAGTGGAGGATTTTTCATGTGTTAGCCCTACTGAGACAAAATCTCCTGAGAGAGAAGAGTTATGTGCACTAGAAGAAGCATCTCCATGCCCTGACAGAACAAAGGTTTCATCAGCTGTGGATAATTCATCTTATGAAATGAAAATCAAAGATACATGTGCCCTCAACAAGCAATCACAATTTAAATACAATGTTTTCAGCAAGTCTGGTATAGAACTCATTGATGGAGACACTCTGCATTCATATCTCTCAAATATTTTTGAGTTTCAAAATGTTACACATGAACAAGAACAGAACCTTTGCTGCTCCTCATCTCAAATGAATATCAGTGAAACGGAAGTTCCTGCTATACTTGAATCTTTGCCGTACTCATTCAAAGGGGTGGATGTCAACAATAAGCAACCCAAAGAATGGGTTATCAATCCTGGCGGCAAAACACCTGTTGCCATTTTACATGAGTATGCCCAAAGAGAACTGAAGGTTAAGCCAGAGTATTCGCACACAGAGGGAAATAATGCTGCCACACCTTTTGTGGCTGAGGTCCGCATTTCTGGTATGGTATATGGGAAGGGAGAGGGGGCAAGCAAGAGATTAGCCAAGCAACATGCTGCAGAAACTGCTCTGGAGGTTTTGATTCCTGAGGTTTTCAACAAGATTTCTAACCATGAGATAACCTCCGAGGAGCACCAGATATTTGACAAGCTCAAGATTGATGATTCCAAGGTGTTTGAGGTTACAACAAAATCAGGATCCTTGAGTCCATATCACATTCTACAGGAATgtttgaaaagAAATCAAGGCGTATACCAGTCTACTATTGACTTTAAGATGAAACCAGAACCGGACCAACGGCAACACACCTATGAGATCACGTGCGCAGGTCACACGGCCACGGGATTCtgtaaaaacaagaaaatcgGGAGGCAGCTCGCCGCTCAAGCCATACTAAAGAAATTGCATCCACACATCAAGACGTGGGGTGCTCTGCTGCGGATATATTCTGAACGACCCTCATCTGTAGTAAAAAAGAGCCCACCCGAGGATCAGCTGCTAACAAGACCGCACGCCCTGTCTGCGGGCGCACCTCGTGGTCAGCTGCTGCTTGAACGCCTCAAAGAGGAAATGCGCAAGCTGCCTCCACACCAAGACGAGgTTCCAGTTGCGATGAACAGAAAATAAGGTTTCAATTCCTGCAAAGATTTATTGCTAGATTCCATATCCAGAGGGATCGAAAGAAACATCTCAAATCTTTCAGATTCGTacatttggggggggggatagggCATCCCCCAGCCACCTTCTGTAACCTCTTGTTTTAGTGAGTCGCGCAAtggtatttattttattttatttttgaattATTACTTCTTAGATAACAAGTTTGTTCATAATCGTGTTTTAACAATTCTCCATTTTATATATCTCTCCGATTTTTATACTCTGCACAGCAGTATCaaggtttttttctttgcatGTATCCACTCGCATGATCCGGGACACGCCCTTGTTTCTCAATATATATATTCGTGAATTTTGAATTAGATTTTTAAGCTTAGAATTTAAAAGCATAATCATATTTTAAAGAATAGTATTAACTGAATCTTTGTattgtaaaatatatatatatataatatttataagCTCTCTGAGGGTCGGGGATCAAATTCAGGCAATTTAATTGCTTTTTACGATCCATTCATCTTATATATTCATGAATTATTCTTGAACCCTATGGTCAAATTCTTTTTTATAGTTGAATAGACTTATATGCTATTAGTTGGCGAAAAAGCCATTTATCGAATTCCACTTTTCAACCATTGAATTCCACGAAAAATCTACTCTGACCAAGAAGAGCGCACATAAATTTGACTATAGGATTCCAAGCATAGAAAACATCTAAAGCTTGTGTTTTAAACCATACCTTTTCACTGTTTGAATGAATTAGAATCACCTTGATTAAGATACCCACCCACATGTACTTTTCGGGTGCTAAGTGTCCATTCTCGGAAACCCGGGGATGGCCTATTTAAGGCCTTTTTACGGACGACCCCTATTTTCGGGCACATTGAAATCAAAACAGCCAAATATGAATTATTCTTGAATCCTATAgtcaaattcttttttttttattgttgaatAGACTAATATGCTATTAGTTGGCGAAAAAGCCATTTATTGAATTCCAACCATTGAATTCCACAAAAAGTCTACTCTGTCCAAGAAGAGCACACATAAATTTGACTATAGGAGTCCAAGCATAGAAAATATCTGAAGCTTGTGTTTTAAACCACCTCTTCACTGTTTGAATAAATtagaattattattttgattaagATACCCAAATGTATTTTCGGGTGCTAAGTGTCCATTCTCGGAAACCCGGGGATACTTTCCCGGGCCTGTACCCGGTAGGGGGGTGCTTTTGCATCCCATCACAGCGGCCGAAAGTTACTCTGGCATATCATCAATCCATAAGTCGGACTGTTTTGTAGACAAATCCGAAATAAACGTCCCATGGAGATACTGAAAAGGCAAAaaaccctttttgttcttttgggagtggtaagatttttatcagaaaactcagtcccccaccaccaccaccgccgccaccaccCAGAAAAATTggggtccactttttcggatttcatctccccccccccccccccccaagaaaaatcctgagTACGGGCATGTTTCCTCTAACGTTCTAACGATTCACTTGCGAGAATGAGACGCCAGAGGAAAATAttacccctgggtttccgaggatgctAAGTGCCCTTAATTGTGTAATCTGTTAAAAGGCCATGTACCGTAATTTGAATGTGTAAAATAAAGTCTTTCAGTACGTAAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8WYQ5	Microprocessor complex subunit DGCR8 OS=Homo sapiens OX=9606 GN=DGCR8 PE=1 SV=1
Q9EQM6	Microprocessor complex subunit DGCR8 OS=Mus musculus OX=10090 GN=Dgcr8 PE=1 SV=2
A6QR44	Microprocessor complex subunit DGCR8 OS=Bos taurus OX=9913 GN=DGCR8 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005453 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00035 all species →	dsrm	Double-stranded RNA binding motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014720 all species →	Domain	Double-stranded RNA-binding domain	Interproscan
IPR040375 all species →	Family	Microprocessor complex subunit DGCR8	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13482 all species →	MICRORNA PROCESSOR COMPLEX SUBUNIT DGCR8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0031053 all species →	Biological Process	primary miRNA processing	Interproscan
GO:0042802 all species →	Molecular Function	identical protein binding	Interproscan
GO:0070877 all species →	Cellular Component	microprocessor complex	Interproscan
GO:0070878 all species →	Molecular Function	primary miRNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18419	DCGR8; microprocessor complex subunit DGCR8	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032242276.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

37TPM > 0

16Conditions

7.3Max TPM

1.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	2.63	3.42
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	1.44	1.79
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	1.41	1.72
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	1.74	2.18
whole 6 week old aboral regenerate · regenerate uncut	3	3	1.46	1.85
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	0.69	2.08
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	1.08	1.83
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	4.02	7.30
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	2.34	3.73
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	3.20	3.45
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	2.72	3.09
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	1.42	2.17
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	1.37	2.13
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	0.93	2.80
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	1.80	2.78
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	1.04	3.12

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.42
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	2.54
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	1.92
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.79
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.42
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.09
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.72
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.37
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.15
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.18
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.95
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.09
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.85
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.62
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	0.91
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	2.08
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	1.83
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	1.39
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	7.30
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.71
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.05
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	3.73
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	3.28
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	3.45
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	3.25
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.92
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.09
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.56
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.51
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	2.17
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	2.10
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.13
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	1.97
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	2.80
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	2.78
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	2.63
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	3.12
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.