Genomic Location: NC_064037.1:11813392...11815775
NR annotation: XP_032242296.1, 39S ribosomal protein L15, mitochondrial [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5516634 |
| Transcript |
| rna-XM_032386405.1 |
| Protein |
| XP_032242296.1 |
| UniProt accession | Description |
|---|---|
| Q0VC21 | Large ribosomal subunit protein uL15m OS=Bos taurus OX=9913 GN=MRPL15 PE=1 SV=1 |
| Q9CPR5 | Large ribosomal subunit protein uL15m OS=Mus musculus OX=10090 GN=Mrpl15 PE=1 SV=1 |
| Q6AZN4 | Large ribosomal subunit protein uL15m OS=Xenopus laevis OX=8355 GN=mrpl15 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005029 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00828 all species → | Ribosomal_L27A | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005749 all species → | Family | Large ribosomal subunit protein uL15, bacterial-type | Interproscan |
| IPR021131 all species → | Domain | Large ribosomal subunit protein uL15/eL18 | Interproscan |
| IPR030878 all species → | Family | Large ribosomal subunit protein uL15 | Interproscan |
| IPR036227 all species → | Homologous_superfamily | Large ribosomal subunit protein uL15/eL18 superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12934 all species → | 50S RIBOSOMAL PROTEIN L15 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0006412 all species → | Biological Process | translation | Interproscan |
| GO:0015934 all species → | Cellular Component | large ribosomal subunit | Interproscan |
| GO:0005762 all species → | Cellular Component | mitochondrial large ribosomal subunit | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02876 | RP-L15, MRPL15, rplO; large subunit ribosomal protein L15 | - | Ribosome | ko03011 | deepkoala |
Transcript abundance of XP_032242296.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 3 | 16.11 | 16.19 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 3 | 12.79 | 15.95 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 3 | 8.83 | 9.70 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 3 | 11.24 | 13.07 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 3 | 9.24 | 9.79 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 2 | 9.48 | 17.55 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 2 | 9.57 | 16.15 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 3 | 18.62 | 22.71 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 3 | 21.03 | 26.83 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 3 | 13.43 | 14.17 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 3 | 12.16 | 12.85 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 2 | 9.86 | 16.81 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 2 | 12.11 | 19.21 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 1 | 6.25 | 18.75 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 2 | 9.13 | 13.99 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 1 | 3.66 | 10.99 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
