Detailed information of XP_032242470.2 in Nematostella vectensis

Genomic Location: NC_064047.1:3989777...4000784
NR annotation: XP_032242470.2, proteasome assembly chaperone 1 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A7RV13Proteasome assembly chaperone 1 OS=Nematostella vectensis OX=45351 GN=psmg1 PE=3 SV=1
Q6DG91Proteasome assembly chaperone 1 OS=Danio rerio OX=7955 GN=psmg1 PE=2 SV=1
B0KW86Proteasome assembly chaperone 1 OS=Callithrix jacchus OX=9483 GN=PSMG1 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009274 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16094
all species →		PAC1Proteasome assembly chaperone 4FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR016565
all species →		FamilyProteasome assembly chaperone 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15069
all species →		PROTEASOME ASSEMBLY CHAPERONE 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005783
all species →		Cellular Componentendoplasmic reticulumInterproscan
GO:0043248
all species →		Biological Processproteasome assemblyInterproscan
GO:0070628
all species →		Molecular Functionproteasome bindingInterproscan
GO:0080129
all species →		Biological Processproteasome core complex assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11875PSMG1, DSCR2, PAC1; proteasome assembly chaperone 1-Proteasomeko03051deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032242470.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples
0TPM > 0
16Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole 6 week old aboral regenerate · regenerate 96hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 144hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 0hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 2hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate uncut 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 4hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 120hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 36hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 24hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 20hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 16hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 72hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 60hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 48hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 8hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 12hpa 3 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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