Gene detail

Detailed information of XP_032242471.2 in Nematostella vectensis

Genomic Location: NC_064047.1:3989776...4002622
NR annotation: XP_032242471.2, proteasome assembly chaperone 1 isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032386580.2

CAACCGAGTGGGGAATTGGTGACTAGTAGcaaatccaagatggtggACGCATTTGGATTGTGGGAGCTAAATTTTCCTTGTTCTAGAGTGgacgacgatgacgatgagGAAGAACAGATAACTAAAGAACAAGAGGAACAACTATGTCCGCAATTTGTATTTTCGCCTCAATTCTCAAAGGATGTGGGAAAAACTGAACCAATCGAATGTTCTGTTTTGGTGTTGGGAGTTGGAGAAGTCGCCTCAACTTTCTTGGAAGTTCATTTTCTTTGTGGAAATAATAGTTCTGTTGCTGCCGTTATATCTGATAAAAAGACAGAGAAAAACTTTGAGTATCTCGTAAAGAATTTACGGAATAAACGAAGCTCTTTGCTACATCAGTTAACACGCAATAATGATGTTATGGTCTGTCAAATCAGCTCACACGTGGAACAAGATAAAGTCTTCTACTGGACACAAAAGATATTCAGTCACATCAGACCAGCTAAGGTGGTCATTCTCACTTCATCTCCTGCAAGCGAATACAACTCAGATGATCCAAGTGAGATAAAAACAGACTTTGTAAAGATGATGAAGACAAATGCTTGGTCAAACAGTTGTGCTGGTCCAGATATCACCTACATCCAAACGCCCAACACAGTCAAAGGATTAGCTGCCTCAGtGTTAACACACTGTCAGATTTACAAGCTGCCTGCCGCCCTGTTCATGTGCTACACAGAGTCCATGCATGTTGATGCCCAAGCTGTGGAGGCATTCAGGGTATTATTTGGAGTCAAGGATCTTTTTAGAGGCATTGAACAGCTTTCCCAGTTTGACACGTCCAAGCTGTAGTCCAGTCCGTATGAGGTCACATATTGATGCGTATGTTGCCTGGAGTCGGGAGCACGGCCTTGTGTGGCCACCTTACTGATGAGTGTCAAGTTACCTAGAAATAGATAACCGTCAAAAACACAATCAAAATCAATTAATGAAGAATAACATAGGTTGACTAGTTATATTGCGTGTATCAGCGGCAATGTGGGGCGTTATTCGAGATTTAAAGACAAATTTTGCCCTTGGGGAAGGGGAATTACATCGCATTTGAAAATATGATACTTACCCATGGGATTACCCTGGGGATTTGTATGGTCAGCGGTAGTAAACAAGATTTCCCGCCATTTGGACTCGTGGCGGCCATATAATGTTCTGTTTATTATATGAAAATCATTGAAATTCCATTTTAgtgtcattatttttttctgatccCATTAGATAACAGTGGAGAAAACTTGTTATCTCCAGACTTCTTGGTATTTCATTGATTTATAAATAATAAGTAcatttataaagaaataacGAAATTTGCGTTGCTCCCCGCCTGTAATAAGTCGCGTGCAGTCTATTGCTCGTTGATTGGTTTATATGTTCAGTTAAAAATAACGAGATTTGAGACGCGCCCCGCGTGTAAGCCCCGTGCAATATGTGGCTTGTTCATCAGTTCATCAGTTGATATGAACAGTTAGAAATAACGAGTTTTTGGTCGCGCCCGCCTCTAAGTCGCGTGCAATATATGTCCTTGAGCGCTTCTTGTTGGAAAATGTCTCgggaaaaaaatcacaaacGTTTGACATGTATTTCTTGCAAAATAATGGAAGGGTCTATTTCTTTGTATATAGCTTATTTGGAACGTTCCCGAGGAATAGGGATTTTGTCACTTCTTTATTGCCCAATattaggttttttttaaaaaccctGATTAAAAACCTGATTAAAAACCCTAATTACCAAAGTGCTTAAAAGCACTTTGATTGAATGTTTTTGCATATCCCCCATGGTCACCGGGAGTCGACCCCTGGGAAAAGCCACTGATACACGCATATTTGTCAGACGTGACCTCTATTTGGTAGTCATCACACGCTCATCCACGAGGGGCGGGAGGGAAAGGCCAAATCCCGTATCTCTTTTGTTCCTCTTATATCGTCTTCTAGGTCGTCTGTACTCCAAATAAATCCCCTTTTTGGGGAGCTATAACCAGATCCCTGATACCCCCCGGCCTATTAAGGCGAATCCTTGTTCTCGTTTTACCCTTCCTTAAAGCGGAATTGATACCAACTTACTTCCAGTCGATTACGTAGTAATCTCCGATGGTTTTTAACgcaaaacgcgaaaaatattttacaattgtaaaagcagtgtgtgtATTGGAAAGCGCAGACtctaatagattttttttttgtctctt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7RV13	Proteasome assembly chaperone 1 OS=Nematostella vectensis OX=45351 GN=psmg1 PE=3 SV=1
Q6DG91	Proteasome assembly chaperone 1 OS=Danio rerio OX=7955 GN=psmg1 PE=2 SV=1
Q9JK23	Proteasome assembly chaperone 1 OS=Mus musculus OX=10090 GN=Psmg1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009274 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16094 all species →	PAC1	Proteasome assembly chaperone 4	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016565 all species →	Family	Proteasome assembly chaperone 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15069 all species →	PROTEASOME ASSEMBLY CHAPERONE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0043248 all species →	Biological Process	proteasome assembly	Interproscan
GO:0070628 all species →	Molecular Function	proteasome binding	Interproscan
GO:0080129 all species →	Biological Process	proteasome core complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11875	PSMG1, DSCR2, PAC1; proteasome assembly chaperone 1	-	Proteasome	ko03051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032242471.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

38TPM > 0

16Conditions

7.0Max TPM

3.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	4.82	5.75
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	3.04	3.81
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	2.00	2.11
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	2.92	3.46
whole 6 week old aboral regenerate · regenerate uncut	3	3	3.02	3.25
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	2.82	4.86
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	2.39	4.02
whole 6 week old aboral regenerate · regenerate 36hpa	3	2	3.17	5.27
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	3.51	5.63
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	2.67	4.22
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	4.07	4.67
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	3.13	4.97
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	4.75	5.96
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	4.23	6.99
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	2.59	4.13
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	1.30	3.90

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	5.75
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.76
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.94
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.81
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.97
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.34
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.11
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.01
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.87
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.46
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.95
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.36
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.25
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.12
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.70
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	4.86
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	3.58
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.02
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	3.14
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	5.27
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.24
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.00
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	5.63
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	4.90
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	4.22
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	3.78
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.67
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.03
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.50
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.97
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.43
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	5.96
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.17
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.13
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	6.99
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	5.69
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	4.13
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	3.64
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	3.90
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.