Detailed information of XP_032242630.2 in Nematostella vectensis

Genomic Location: NC_064035.1:15720964...15733135
NR annotation: XP_032242630.2, uncharacterized protein LOC116620845 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8NE09Regulator of G-protein signaling 22 OS=Homo sapiens OX=9606 GN=RGS22 PE=1 SV=3
G3UYX5Regulator of G-protein signaling 22 OS=Mus musculus OX=10090 GN=Rgs22 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004292 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00615
all species →
RGSRegulator of G protein signaling domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR016137
all species →
DomainRGS domainInterproscan
IPR036305
all species →
Homologous_superfamilyRGS domain superfamilyInterproscan
IPR044926
all species →
Homologous_superfamilyRGS, subdomain 2Interproscan
IPR042651
all species →
FamilyRegulator of G-protein signaling 22Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46583
all species →
REGULATOR OF G-PROTEIN SIGNALING 22Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0001965
all species →
Molecular FunctionG-protein alpha-subunit bindingInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0009966
all species →
Biological Processregulation of signal transductionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_032242630.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032242630.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples
34TPM > 0
16Conditions
11.5Max TPM
3.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole 6 week old aboral regenerate · regenerate 96hpa 3 1 0.98 2.95
whole 6 week old aboral regenerate · regenerate 144hpa 3 3 2.27 3.22
whole 6 week old aboral regenerate · regenerate 0hpa 3 3 3.27 4.49
whole 6 week old aboral regenerate · regenerate 2hpa 3 3 9.85 11.50
whole 6 week old aboral regenerate · regenerate uncut 3 3 5.52 10.71
whole 6 week old aboral regenerate · regenerate 4hpa 3 1 2.27 6.80
whole 6 week old aboral regenerate · regenerate 120hpa 3 2 2.37 3.93
whole 6 week old aboral regenerate · regenerate 36hpa 3 3 2.69 4.45
whole 6 week old aboral regenerate · regenerate 24hpa 3 2 3.15 5.96
whole 6 week old aboral regenerate · regenerate 20hpa 3 2 4.91 11.38
whole 6 week old aboral regenerate · regenerate 16hpa 3 3 4.18 6.00
whole 6 week old aboral regenerate · regenerate 72hpa 3 2 1.95 2.98
whole 6 week old aboral regenerate · regenerate 60hpa 3 2 1.58 2.72
whole 6 week old aboral regenerate · regenerate 48hpa 3 1 0.94 2.81
whole 6 week old aboral regenerate · regenerate 8hpa 3 2 2.67 4.51
whole 6 week old aboral regenerate · regenerate 12hpa 3 1 1.71 5.14

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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