Gene detail

Detailed information of XP_032242701.1 in Nematostella vectensis

Genomic Location: NC_064045.1:3689413...3701623
NR annotation: XP_032242701.1, diacylglycerol lipase-beta isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032386810.2

GCGGAACGCCTTGTCAAAGTCGTCTACCCATGACAAGATGAACGTGATTGGTGCCTGTTTCACTTTTTCCGCACGAAGCTGGAAAGAGCTCAACTTCAAGGTTTTCAAATGAGCCCCTCCTAAGCATTCCAAGCCAAAACCAACTTCCATAAACGACAATGCCTGCCCTAGTTGCCTTCAACCGCCGCTGGCAGATTGGCAGTGATGATCTGGTCTTCCCATTCACTGCTGGTTTGATGGCCAGATTTGCctgGTTCATTGTGGTCTGCTCAATTTATGGAGTTTACCACAAAGACCTCAAAGAATGTCACTCCCAGATTGCTTTGCAAACTTTCTTTATTGGTGTCATCATTGTAGCATGCCTTGTCATGGGAAATGAGGTTGCGATAATCTGGACAAGCATGCAAGGAACAATTATGAACACCAGACCACGTCAGCGAATCCCCATACTTCTTTACATCCAACTTGCCCTGTATGTGCCAGAAATTGCACTGTCCATACTTGGTATATACTGGGCTTTCCATAGTAGCACTGGGTGTGAATTGGGTGTGGTGGTTCCAGTACAGATCACTGTGGTACTGCAGTGGCTGATTCTGTTGTCTGTATTTGCTGCTGCGGCCATGTTTTTTGACCCACTTGGAGCTCTTCACAAGCAAGATCGCAGTATTGAACAATCAAGCAAGTTGTGGGAGAGGAGATGTCGTCTGCTGTGCTGTTGCTTTGCTGGCAATGATCAGCAATACATGAACGCCATATCACAAATTGCGGAGATGTTTGCATCTGAGTTGCATGGCGTTGACGCTGTTCCATCAGACGTGGCTGTTGGCCTGATTCTTTTGCAGCAACAGCAAGAGATTGAATCAAGAGGAAAGCCATGGTACTCTGGTACTCCAGTTGACCTGAGCAAGGATGAGGAGAGATCCCGTATTGATGCTGCAGCTTATTTTATGCGCTACTCCGTTGGCTCTTATGGTTGGCCCATGTATGTCTTCATGAATCCATGCTGTGGGCCATGCAGTCTCTGTCAAAAAGCCAGATGCAGTGCTTGTTGCTATCCTGCTAACTCATTGGCCCACATCATTAAGGACAACTGCTGTATGTGTAACACAGCCGCCATTCATCTACAGACGGAGCTACGAAACGAGGATTTGTTTTACTGTTCGTACCACAATAAGCTGTACGAGATTCCATTCTACGTTGCGCTAGACCGTGATAAGAAGACAGTTGTGGTGTCCATCCGGGGAACTCTTTCCATGAAGGATACATTGACAGACCTGACAGGCCACGGAGAGGACATACATATCGAGGGACTAGACGGTGGTATGGCGCACAAGggtATGTATTTGAGCGCTACTTACATCAAGGGTCAACTGATAGACCATGGAATATTGCAAGAGGCTTTCGACGAGGCGGCGAAAACTGGAGAAAGCTACCgtctggtggtggtgggtcaCTCACTCGGTGCCGGTACAGCCTCAGTGCTCTCCGTCCTTCTCAAGCCCATGTACCCCGACCTGCAGTGTTTCGCGTACTCGAACCCAAGTTGCCTGAACGAGTCAGCGTGCACCCGGACAGAGGACTACATCATGTCTGTTATCGTCGGCAAAGACGTCGTGCCGAGAATGGGCGTAAAAAATCTCAACACTCTCAAGCGTGACTTGGAGACCGTGATAATGAGATGCAATCAACCAAAGTATCGCGTGCTCATATCAGGCTGCTGGCGAGCCCTCTGTTTCTTACTCGACAAGAGAAGCAATGGACAAACCGAAGGTGAGCGACAACCTCTGAACTCCGAGGGCTCAGCTTCGTATGTAGAGGAGGGACTGGGCAGCCTCGCTGAGAGAGAGCCTGGTACTAGTGACGTCACGAATGGAAAGTCACTTGTTCAGCTTTACCCCGCGGGCAAGATTCTGCAAATCAACGAGCTTCCCCAAAACAGGTTCGACCTGCTGTGGGCGAATCGCCAGATGTTTCAGCGGGTGCTGATTAGTCACACGATGCTAAAGGACCACTTTCCTGACGTGGTGCTCAAAGATCTGACCGAGATCGCTAAAAGAGCCTGAGCCTAAGTGATGACTAGCGCAAGGCGTTCCTCGTTCAAGTCGAAAAAGACTCAGCCCAAGTCATTGCTATACTCTAGGCGTTCCTTGACAACACGGGAAGGATTTAGGTTTACCGTTAGGAttaagggcgcgtttttttactcgtgattccggaatgagaatgattagaatagaaaaagcgcgcgttcgtttattcCACGTTCCTATATCGTAATGGAATGAAGGTCATTCCACCTGTTCTACcctacctgtagcagaatgactcgaattccattctgaacattctctaccaaccattcccattccagaaagataggaaaaaaaacgcgccctaagACTAGAAATATAGTTCCGGTTCTCAGTCCGAGTAAATTAAACAAGTGTACTTAATCTTTAACGTTTTATGTCCAAAGGAGATAGATCAACTAGATTTTGTAGATAAGAAAATGTAGCCTACGTGCTTTTTGTACATGTAAATTAGTTTGAATTTGTGTCACCAAAAGGCGTAGAATCAAAGCCGGACCATACGCTGAAACCAGCCTACTCTTTGTTGTTCCCTGTTCCCTCATAGATGAGCCGTGAGGAAGcgtttgggtttcctgtgtcgACAACCACAGGATACCCGGTCAGAACACCAGGGACTGCGTCAAACGCGAATTCTGAAATCCAGAATAATTTTCCCAAAGCCACAAATAGTGCACGAGCTGCGTCTGTCCAGGAACAACCACTCCAGGGATTGGTTTCACACCATAAATAATCCCATACTAGTCTCGGGCGCTCTTACCTGGTTTCCTGTCCTTGGAGATAACCGTAAGACAACTTGGGGTCTGGGACGAGCTCACCCATTTCCTTTTTAGAAACCACAGGGAGTTCAATCAAAAACTCGGGTAAGAACGCCCGCGACTGGGCAGAAATCACAACTGCCAAAGCAATACAATTGCACTCCCTTAAATGGTAAAACGAATCGTGCGTTTGTTGTGTCAACATGTGTTAAACAAATAatagataataaaaaagaagtgATAAGATGCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6WQJ1	Diacylglycerol lipase-alpha OS=Mus musculus OX=10090 GN=Dagla PE=1 SV=2
Q5YLM1	Diacylglycerol lipase-alpha OS=Rattus norvegicus OX=10116 GN=Dagla PE=1 SV=1
Q9Y4D2	Diacylglycerol lipase-alpha OS=Homo sapiens OX=9606 GN=DAGLA PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001635 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01764 all species →	Lipase_3	Lipase (class 3)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR002921 all species →	Domain	Fungal lipase-like domain	Interproscan
IPR052214 all species →	Family	Diacylglycerol Lipase-Related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45792 all species →	DIACYLGLYCEROL LIPASE HOMOLOG-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0016042 all species →	Biological Process	lipid catabolic process	Interproscan
GO:0016298 all species →	Molecular Function	lipase activity	Interproscan
GO:0019369 all species →	Biological Process	arachidonate metabolic process	Interproscan
GO:0046340 all species →	Biological Process	diacylglycerol catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13806	DAGL; sn1-specific diacylglycerol lipase	EC:3.1.1.116	Phototransduction - fly	ko04745	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032242701.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

45TPM > 0

16Conditions

22.5Max TPM

13.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	13.15	15.14
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	10.43	13.07
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	13.26	14.21
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	14.25	14.92
whole 6 week old aboral regenerate · regenerate uncut	3	3	12.57	13.34
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	12.66	22.45
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	14.98	18.29
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	15.80	17.54
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	14.95	16.32
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	16.05	17.01
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	16.82	18.11
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	13.10	14.39
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	15.48	19.96
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	10.09	15.29
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	18.60	19.72
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	10.32	17.09

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	15.14
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	13.17
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	11.14
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	13.07
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	9.52
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	8.69
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	14.21
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	13.19
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	12.39
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	14.92
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	14.11
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	13.73
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	13.34
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	12.38
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	11.98
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	22.45
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	15.53
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	18.29
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	14.04
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	12.62
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	17.54
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	17.26
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	12.60
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	16.32
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	15.77
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	12.75
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	17.01
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	15.76
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	15.37
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	18.11
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	16.93
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	15.41
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	14.39
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	13.95
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	10.95
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	19.96
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	14.36
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	12.11
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	15.29
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	14.97
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	19.72
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	18.92
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	17.17
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	17.09
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	13.87
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.