Detailed information of XP_032242726.2 in Nematostella vectensis

Genomic Location: NC_064045.1:4176522...4182648
NR annotation: XP_032242726.2, testis-expressed protein 2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8IWB9Testis-expressed protein 2 OS=Homo sapiens OX=9606 GN=TEX2 PE=1 SV=2
Q6ZPJ0Testis-expressed protein 2 OS=Mus musculus OX=10090 GN=Tex2 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008148 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10296
all species →
MMM1Maintenance of mitochondrial morphology protein 1FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019411
all species →
DomainMMM1 domainInterproscan
IPR031468
all species →
DomainSynaptotagmin-like mitochondrial-lipid-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13466
all species →
TEX2 PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005783
all species →
Cellular Componentendoplasmic reticulumInterproscan
GO:0008289
all species →
Molecular Functionlipid bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_032242726.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032242726.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples
39TPM > 0
16Conditions
9.9Max TPM
4.3Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole 6 week old aboral regenerate · regenerate 96hpa 3 3 6.80 9.88
whole 6 week old aboral regenerate · regenerate 144hpa 3 3 4.18 5.54
whole 6 week old aboral regenerate · regenerate 0hpa 3 3 5.20 6.75
whole 6 week old aboral regenerate · regenerate 2hpa 3 3 7.12 8.30
whole 6 week old aboral regenerate · regenerate uncut 3 3 4.15 4.65
whole 6 week old aboral regenerate · regenerate 4hpa 3 2 3.73 6.58
whole 6 week old aboral regenerate · regenerate 120hpa 3 2 3.34 5.62
whole 6 week old aboral regenerate · regenerate 36hpa 3 3 5.56 6.74
whole 6 week old aboral regenerate · regenerate 24hpa 3 2 3.49 6.51
whole 6 week old aboral regenerate · regenerate 20hpa 3 2 3.51 5.71
whole 6 week old aboral regenerate · regenerate 16hpa 3 3 4.49 5.41
whole 6 week old aboral regenerate · regenerate 72hpa 3 3 6.22 8.44
whole 6 week old aboral regenerate · regenerate 60hpa 3 3 3.88 5.01
whole 6 week old aboral regenerate · regenerate 48hpa 3 1 2.04 6.12
whole 6 week old aboral regenerate · regenerate 8hpa 3 2 3.06 5.12
whole 6 week old aboral regenerate · regenerate 12hpa 3 1 1.82 5.45

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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