Gene detail

Detailed information of XP_032242792.2 in Nematostella vectensis

Genomic Location: NC_064045.1:3804974...3812416
NR annotation: XP_001636978.2, alkyldihydroxyacetonephosphate synthase, peroxisomal [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032386901.2

TGGAAGTAGGGGAATCGTTACCTTATGATGTAACGCATCGCTTTGTCACGCGCTTAAACTATTTCCGGGAAATTCACAACAGATGATGTAAAGTTTCGATTCGGATGGAGTTCAACGGTATGCTGAAAAagagaATTTAAAAGCAGCAATATTCTGAACCATGAGCCACCAAAGAAGACTCCAGGCATTTGCTGGTCATTTGAAAACATCTCCAGAACAACAAATCTGTGCCAACAAGGATAGAAAATCAGAATCGAAAGAATTTCCAGGAAGACACGGTGAGCTTAAATGGAATGGTTGGGGTTATAATGATTCTAAATTCCAACTTGACAAGGATGGGAAAGCTTCGTTTACTGGCTCAAGATACCTTCTAAGTGGGCAGACATTCCCAAAGTTGGTGGACTGGTTTCTAAAGGAGTGCTCTGCTGACCTGAACAAGAAATCACCAGCCAACCCGCTACCAGAACCTGCAACACTGCCGCAGCCTATCAGCAACGAGGATTTCCTTAAAGCAATAAGTCAGATTAATGTTCAGTTCACACAGGATGCTCACCAGAGATTATTCCATTGCCATGGCCACACTGGACACGAAATTTTCATACTGCGGCATGGCAAGCCTGGGAGGATCCCGGACGTTGTGGTATGGCCCCATTGTCATGATGAGGTGGAGTCCATAGTGAAGGCGGCCGTGCAGTGTAATGTGTGTGTTATACCATTTGGGGGCGGGACCAGTGTGTCGACGGCCCTAGAATGTCCAGCAGATGAGACAAGAATGATTGTGTCGCTTGATATGACTCAGATGAATAGAATCCTGTGGATTGATGAAGGCAATCTTGTAGCTCATATTGAGGCTGGGATCATTGGTGAAGAGCTAGAAAAACAGCTTCAACAGAAAGGCTTGTGTGTTGGTCATGAGCCGGACTCTCTAGAATTCAGCTCTCTTGGTGGATGGGTGGCAACCCGTGCCTCTGGTATGAAAAAGAATGTCTACGGTAACATAGAGGATATCATTGTTCGTATTCGGATGGTTACACCACAGGGGACAGTGGAAAAGAGTTGCCAGGTGCCCCGCATGTCTACTGGCCCTGACCTCCACCACTTCATCATGGGGTCTGAGGGCACCCTGGGCGTCATCACAGAAGTAACCCTACGAATCCGGCCCGTCCCGGAAATCCGAGTCTACGGTTCAGTAGTTTTCCCCGATTTCGAGAAAGGCGTGGCGTGTATGCGTGctgttgcgcatgcgcgttGCGCCCCTGCCTCCGTGCGCCTGATGGACAATGAGCAGTTCCGGTTTGGTCAGGCGCTGAAGGGAGACGAAGGGTCATTGTTCAAGTCAATGGTGGACGGACTCAAGGCTATCTACTTGACTAAATTTAAAGGCTACGATCCCGCCTGTCTATGTGTCGCGACACTTCTCTTTGAGGGCACCCCAAGCGAAGTTGCGATCCAGCAGAAGAGAATCTACGAGCTCGCGGCGAAGTTTAATGGCATCCCGGCCGGCGAGGAAAATGGGAAACGTGGCTATATGTTGACTTTTGTTATCGCTTATTTACGTGATTTCGGTTTCGAGTACTACTTCCTTGCTGAATCGTTCGAGACTTCCGTTCCCTGGGACCGCGTTTTGAGTTTGTGTATCAACGTGAAAGAGTGTATCAACCGGAAGTGCGCGGAGCTAGGAGTGCGTTACCCACCGCTGGCCACATGCCGTGTCACGCAAACCTACGACGCGGGCGCATGCGTGTACTTCTACTTCGGGTTCAATTACTACGGATTGGCCGATCCGCTACACGTGTATGACGCCATCGAAAGCGCGGCACGTGACGAGATTTTAGCCAATGGCGGCAGCCTTTCGCATCACCATGGTGTCGGAAAGCTTAGGAAAAAATGGCTGCCGAAGACGGTGTCGAATGTCGGTATGGAGATGCTGAAGGCGGTCAAGAGAGCCATCGACCCGAAGAATATCTTTGGCAACGGGAATCTGTATTAATTTTGAACCTTGAGCGAATAGAAAAGACGTGTTGTTGTCGTTACCTCAAGAGACGTCAGTCCTAATATCAGCGCCTAATCTCCATTTTATATGTCAACACATTGCATCAACCATGCAATGGTTTCCAAGTTACACTTTTACCCATACCATCCAACGCATTGCATCATCTCACCAGGGCCAGAGTTGAGGTGTCGTGCTCTTGCCAGCCGCAGgagacaaaagaatatattagaatccgcgcaatttaacaggccatccgcctTACATTATGTATAATGGTTATCTCACAGACTGTTTCAAAACAAACTTGCTCTTGTGAGCCCAGACATGTGTGCGTATGAACGAGatgcacacacacacacacaaagtCAAATATAGATTCATCTTGACAGATTCATCTTTATAGATTCAACGTGAACATAGCATTTTGCGCAGACTTTTGTCTGTAGCTAACTTTTCCTTGTGCGCATAGATCTGGGCGCTCGACGCTCATCAAACAGACTCAAAGTCAAAGATAGAATTCCCCTCGCAAATAACCTTGAAACGACGGCAAtcgcaccagtttacttctggagggccgacggaaacatcaaccgacaagagacaaaagaatctaatAAAATCCTCCATATTTAACGGGCCATCCGATCTAAcctatcagtcacatccttaaagaaactttcaaaagacacactgctattacaattttgaaatatttttcgttaaaaatcatcggatattgctACGCAATCGACCGGAATTACTGGTGACTATGCCGCTTGAACTCATTGCATTCCACATCTTTTCCAGTCTAagccaggcgcgtacccaggattgatCGAGCTGGGTTTTCTATCATAGGAATCAtgtggaaaaagcatagtatttgaagattccttaataagaaatgacccactttttggccgccaaggggggcgCGTACTGACTGCATTTGATAACGATTCGAGGTGACCTTATCCTCACCCAAAACCCTTCCTTACATATATCGCCAAAGTATCATAACTTAGCCTTTGCCTCAACTCATATTTCACGTCCAGTTCTTAGAAAACAGGTTTATCCCTGAattagcgctaacctgctttctaggaagcAGCCCCAGATTAACAAATGTAGCTTATAATTCTCTCATGGACAATGGGCTTTTCTAGTTTAAATGAAATATGAAACTCTGGcccaaaagaaaaagataTAAATGGAGAGGAAGATAGCTAGAATGATTCCAATGATGAaccagtgatgatgatgaaccaACGATGAACGATTATGAACTTGAATAATGTAAACGAGGTAAATCTCCAGATAACAGACAAATCCCATTGTGGACAATGTTCTTTTTTAGTACAATAGAATATCAAACTTGGCCCTAGACAaattataaatttatacagaaAATTGATGGCCTCAAGGCTGCTAATAATACACGTGCGtgtatttttgtattattaGCTTGAAGAACATTACGAGTTGTAGTTCAGGAAAACTGGTAGATTGACATTGTAGATGGACATCATATTACTAACTGTGTGCCATAAATTAGGGGATACGATTCGGAAAAtggaaatttttttaaacgattttgaaatttgaaaatgttcGAAATACATGTGATAACACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97275	Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Cavia porcellus OX=10141 GN=AGPS PE=1 SV=1
Q9EQR2	Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Rattus norvegicus OX=10116 GN=Agps PE=1 SV=1
O00116	Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Homo sapiens OX=9606 GN=AGPS PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007340 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01565 all species →	FAD_binding_4	FAD binding domain	Domain	Interproscan
PF02913 all species →	FAD-oxidase_C	FAD linked oxidases, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016164 all species →	Homologous_superfamily	FAD-linked oxidase-like, C-terminal	Interproscan
IPR006094 all species →	Domain	FAD linked oxidase, N-terminal	Interproscan
IPR016169 all species →	Homologous_superfamily	FAD-binding, type PCMH, subdomain 2	Interproscan
IPR016167 all species →	Homologous_superfamily	FAD-binding, type PCMH, subdomain 1	Interproscan
IPR025650 all species →	Family	Alkyldihydroxyacetonephosphate synthase	Interproscan
IPR016171 all species →	Homologous_superfamily	Vanillyl-alcohol oxidase, C-terminal subdomain 2	Interproscan
IPR004113 all species →	Domain	FAD-binding oxidoreductase/transferase, type 4, C-terminal	Interproscan
IPR016166 all species →	Domain	FAD-binding domain, PCMH-type	Interproscan
IPR036318 all species →	Homologous_superfamily	FAD-binding, type PCMH-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46568 all species →	ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0008609 all species →	Molecular Function	alkylglycerone-phosphate synthase activity	Interproscan
GO:0008610 all species →	Biological Process	lipid biosynthetic process	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00803	AGPS, agpS; alkyldihydroxyacetonephosphate synthase	EC:2.5.1.26	Peroxisome	ko04146	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032242792.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

36TPM > 0

16Conditions

7.4Max TPM

2.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	5.15	7.36
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	3.23	4.50
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	4.70	5.44
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	5.55	5.77
whole 6 week old aboral regenerate · regenerate uncut	3	3	3.41	4.18
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	1.02	3.07
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	2.80	4.73
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	3.06	3.24
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	1.81	3.42
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	1.61	2.62
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	2.17	2.77
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	2.95	4.86
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	2.58	4.01
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	1.97	5.91
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	2.38	3.84
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.97	2.91

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	7.36
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.45
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.64
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.50
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.82
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.37
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	5.44
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	4.70
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.95
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	5.77
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	5.77
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	5.12
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	4.18
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.57
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.48
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	3.07
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.73
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	3.67
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.24
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.98
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.97
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	3.42
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.02
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.62
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.22
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.77
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.20
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.53
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.86
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.00
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.01
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.72
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	5.91
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	3.84
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	3.30
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	2.91
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.