Gene detail

Detailed information of XP_032242819.2 in Nematostella vectensis

Genomic Location: NC_064036.1:1534682...1543588
NR annotation: XP_032242819.2, prolyl 3-hydroxylase 2 isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5517048

ATGGCTGGCCAGTTGATCATTTCTCTATCTTTTGTAGCGTCTCTCAACTTCTTTGTCCAGGCTGATCTATTGGATAACTTGAATTTCACAAGGACAAAAACAGCGCAATACGACGAGTTGTATAACGATGGCTTGTACGCTTACAATTTGAAGAACTATTCAGCTGCCGTAAAATACTTCGAACAAGCGATAGCTGACTACAGACAGCAAAACGAAGTCAAACTTCACTGTCGCTCAACTTGCGCAGAAAAGTTTCGTAAATCGCTAGGTTTCCGTAATGTCGGGGCTGTCTTAAAGGACATTGAGTTAGAATATTTTAGATTCACTATTTTTTCGCGAAAATGCACGCAAGTATGTCGTGAGAAATACTTGGGCAAGAGGGCTGCCGTGAGTCCACGCGTGGACGAAGATTTCAAGTTCAGGAGGGCATATTCCTATCTGCATTTCGCGTATTACAAGACTGGCCAGATCATCAAAGGTGCCCGGGCTGCATACACCTTCCTGGAAACATCCCCAGATGACCAGTTCATGCTCGATAACATGAAATACTATAAGTCACTCCCCATTGTCACAGACGACCTTATGATCTCTTTTGAGCCAATGCTACACCAAGAGAAATACTTCAAGGCTGTTAAATTCTATGAAGAGCAAAAGTTTGAGCTGGCAGTTGAGGGCTTTGAGGAAACACTAAAGGAGTATTATAAGGCGTATGAGAGATGTAAGCTGATGTGTGAGGAGAAGAGGGAGAGCAACAAGATGCTTGGACGAAGCGGACTTTATGGAGTGTATGTGGATGTGTTGAGCTGTCGGGCTCAGTGTCCGATAGAACTGGCAACAGTCAAGGGGCACACAGTTGACAAATATCTGGCCAGACACTATAATTATCTGCAGATGAGTTACTGGAAAGCTGGTCAAACTCTCAAAGCTGCCGAATGTGCAACCACTTACCTCCTGCTTGATCCAGATGATGACAATATGATTGACAACCTTAAGTACTTCAGATGGTATTCCAAGGCTAATGGAGAGCAGATCCAGGCAAGAAAGGAAGTAATTGACTATTACCGTGAGGTCACCTTAGAAAGCAGGCTTCTACACCTTGCCGTGATGTACACAGATGAGGACAATATGGCTTTCTCAGACGAATTGTTTGAAGATGCTGATGCACCTGACAGTGAGGAGGACAAGAAGGATAAAGGTTTACAAATAGCAGAGGATCTCGTAGAAGGAGAGGACTCAGATTACTCAGCCATCCGTCTATCTGGCCTTGGACCTGCCAGGAGTCCAAGTGAAATCAGACCCATCCAGGAAAAACTTAAGGAAGGAAAATATCAGAATGCTGTTGTAACAATGACAGAGGACAAGCTCAATGGGAGCAATAGATTTGTTGCAGATCAGTTCATTTCTGAGGAGGAATGTAAAACTCTTATGGACCTCGCAAGGACTGCCAAACTAGGAGATGGCTACAATGACCGGAGCATGCCGGATGGGAAACCTTTCTCGTTCACGGAGCAGGAGACTTTTGAAGGAGTTACTCCAGTGTCAGCGGCAAAGGCCATAATGCAAGGAAAAGTGGATATTGAGCCAGTCGATCTGTACTTAAACTCCAGCGAGAGGATGCGGGATTTCGTGGAGGATTATTTCCAACTGGAAACACCTCTGTACTTCTCATACAGCCATCTGGTCTGCAGAACGTCACTACCAGGGTCCAAGGAGAAGCAGCACATCAGTCACCCTGTGCACTCAGATAACTGTCTGTTGCACCATGACGGACCGGGCACGTGTCCCAAGCGATCGCCTGCATTCACGTGGAGAGATTATAGTGCCCTTCTGTATCTGAACGAAGACTTCGAGGGTGGCGAATTCATCTTCACACACCCCAACGAGACAATTCAGGCGGCAGTAAAACCCAAGTGTGGCCGAATGGTTGGCTTCTCGGCCGGTGTTGAGAATCTCCATGGAGTCCTCGGCGTGGAAGGTCGAAGGTGCGCGGTCGCATTGTGGTTCACGATGCGCGTCAAGCATGACGAGATGTCGCGATGGGAAGCCAAGAAACTCGTGCGCCAGGCCAAGGAAAAGATGGTAGGCAAGGAAAATCTGCAACAGCAGTTTGCCAAGCCCGATATCCAGAGCCATGCCGAGTTATAG

Transcript

rna-XM_032386928.2

AGTCTCAATAGACGAGAGCACTTCATTGACTCTTGAACGAGAAACATGGCTGGCCAGTTGATCATTTCTCTATCTTTTGTAGCGTCTCTCAACTTCTTTGTCCAGGCTGATCTATTGGATAACTTGAATTTCACAAGGACAAAAACAGCGCAATACGACGAGTTGTATAACGATGGCTTGTACGCTTACAATTTGAAGAACTATTCAGCTGCCGTAAAATACTTCGAACAAGCGATAGCTGACTACAGACAGCAAAACGAAGTCAAACTTCACTGTCGCTCAACTTGCGCAGAAAAGTTTCGTAAATCGCTAGGTTTCCGTAATGTCGGGGCTGTCTTAAAGGACATTGAGTTAGAATATTTTAGATTCACTATTTTTTCGCGAAAATGCACGCAAGTATGTCGTGAGAAATACTTGGGCAAGAGGGCTGCCGTGAGTCCACGCGTGGACGAAGATTTCAAGTTCAGGAGGGCATATTCCTATCTGCATTTCGCGTATTACAAGACTGGCCAGATCATCAAAGGTGCCCGGGCTGCATACACCTTCCTGGAAACATCCCCAGATGACCAGTTCATGCTCGATAACATGAAATACTATAAGTCACTCCCCATTGTCACAGACGACCTTATGATCTCTTTTGAGCCAATGCTACACCAAGAGAAATACTTCAAGGCTGTTAAATTCTATGAAGAGCAAAAGTTTGAGCTGGCAGTTGAGGGCTTTGAGGAAACACTAAAGGAGTATTATAAGGCGTATGAGAGATGTAAGCTGATGTGTGAGGAGAAGAGGGAGAGCAACAAGATGCTTGGACGAAGCGGACTTTATGGAGTGTATGTGGATGTGTTGAGCTGTCGGGCTCAGTGTCCGATAGAACTGGCAACAGTCAAGGGGCACACAGTTGACAAATATCTGGCCAGACACTATAATTATCTGCAGATGAGTTACTGGAAAGCTGGTCAAACTCTCAAAGCTGCCGAATGTGCAACCACTTACCTCCTGCTTGATCCAGATGATGACAATATGATTGACAACCTTAAGTACTTCAGATGGTATTCCAAGGCTAATGGAGAGCAGATCCAGGCAAGAAAGGAAGTAATTGACTATTACCGTGAGGTCACCTTAGAAAGCAGGCTTCTACACCTTGCCGTGATGTACACAGATGAGGACAATATGGCTTTCTCAGACGAATTGTTTGAAGATGCTGATGCACCTGACAGTGAGGAGGACAAGAAGGATAAAGGTTTACAAATAGCAGAGGATCTCGTAGAAGGAGAGGACTCAGATTACTCAGCCATCCGTCTATCTGGCCTTGGACCTGCCAGGAGTCCAAGTGAAATCAGACCCATCCAGGAAAAACTTAAGGAAGGAAAATATCAGAATGCTGTTGTAACAATGACAGAGGACAAGCTCAATGGGAGCAATAGATTTGTTGCAGATCAGTTCATTTCTGAGGAGGAATGTAAAACTCTTATGGACCTCGCAAGGACTGCCAAACTAGGAGATGGCTACAATGACCGGAGCATGCCGGATGGGAAACCTTTCTCGTTCACGGAGCAGGAGACTTTTGAAGGAGTTACTCCAGTGTCAGCGGCAAAGGCCATAATGCAAGGAAAAGTGGATATTGAGCCAGTCGATCTGTACTTAAACTCCAGCGAGAGGATGCGGGATTTCGTGGAGGATTATTTCCAACTGGAAACACCTCTGTACTTCTCATACAGCCATCTGGTCTGCAGAACGTCACTACCAGGGTCCAAGGAGAAGCAGCACATCAGTCACCCTGTGCACTCAGATAACTGTCTGTTGCACCATGACGGACCGGGCACGTGTCCCAAGCGATCGCCTGCATTCACGTGGAGAGATTATAGTGCCCTTCTGTATCTGAACGAAGACTTCGAGGGTGGCGAATTCATCTTCACACACCCCAACGAGACAATTCAGGCGGCAGTAAAACCCAAGTGTGGCCGAATGGTTGGCTTCTCGGCCGGTGTTGAGAATCTCCATGGAGTCCTCGGCGTGGAAGGTCGAAGGTGCGCGGTCGCATTGTGGTTCACGATGCGCGTCAAGCATGACGAGATGTCGCGATGGGAAGCCAAGAAACTCGTGCGCCAGGCCAAGGAAAAGATGGTAGGCAAGGAAAATCTGCAACAGCAGTTTGCCAAGCCCGATATCCAGAGCCATGCCGAGTTATAGGCGTCTAGTACAGAGGCAATTGAGTCCTCCATATTACTGCTGGTAGGCGGAGtagaaaaacataaaacaagAGCGATGTGGCGCCAAGACCGAGGTTGGTAGACGAGTTAGTGTTAGCAAGCTGACAAGCCTAGAAGCATGTAGTAATAGAGGTGAGATAGAGGTAAGAGTTGACCACACACCTCTACATAATGTGTGTGTGCTTAAATATTCGGGGCGCATATTTTTAACCACCGAAATGCTCCAGAAACTGTGTTTCGTATATCCCCCCGTATTTTTAATTCCCCTGAATagggtattccttggtgttacggagggCTTTGTTTAAtagtgctgtaggcatttgtACTCTctttcattgtctcgttctaaggtctttgtttttggcttttgttctattgtgtttttggtgctggtgctccgtaacaccaagaaactacccATAAATCATACCAACGACGAATCATTGTAAGACAGCAGTGTTCTCTTGCAAATACTCTACCGAGTGTGTTGAATGCATTTGGCAAGAGATAACAGATAGTTCGCTGTTATGACCAAGTAATTGGTTTAGAATGACAGACGTACCTTCACTCTTAGTCACTAAAGATACAAATACGGCGTGTGCTGTTATGTTAGATAggccatttaaaaaaaagaagatagGATAAAAAGCCTTCCGTGCTATATTGCGACAGATGAAGACCAGAAGAGTTTATATAAGGGTAAGGATGTGACCACGTGCTGAAAGTAACTTACAAAGAAGCTATATCGAGAGCTTTTTATAACGACTGCCCTCGTTCTGTGAGGCAGTGAGGATTGCTTTACAATTTTCTGAATTTAAAAAgataatatattataatatatagaAATTATGTATTATAAATGACCACATTTTATAGAGTTTTATATAAAAAGAGATCTTGTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IVL5	Prolyl 3-hydroxylase 2 OS=Homo sapiens OX=9606 GN=P3H2 PE=1 SV=1
Q4KLM6	Prolyl 3-hydroxylase 2 OS=Rattus norvegicus OX=10116 GN=P3h2 PE=1 SV=1
Q8CG71	Prolyl 3-hydroxylase 2 OS=Mus musculus OX=10090 GN=P3h2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004255 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13640 all species →	2OG-FeII_Oxy_3	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR039575 all species →	Family	Prolyl 3-hydroxylase	Interproscan
IPR044862 all species →	Domain	Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain	Interproscan
IPR005123 all species →	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan
IPR006620 all species →	Domain	Prolyl 4-hydroxylase, alpha subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14049 all species →	LEPRECAN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0032963 all species →	Biological Process	collagen metabolic process	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0031418 all species →	Molecular Function	L-ascorbic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032242819.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032242819.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

42TPM > 0

16Conditions

39.9Max TPM

18.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	29.72	37.62
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	20.99	28.36
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	12.27	14.93
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	14.54	17.69
whole 6 week old aboral regenerate · regenerate uncut	3	3	12.18	13.75
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	4.32	12.96
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	30.82	39.77
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	26.05	34.40
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	11.00	19.95
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	8.57	13.35
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	10.74	13.63
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	31.61	39.86
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	26.81	27.30
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	19.09	35.75
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	20.74	25.29
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	8.31	15.55

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	37.62
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	30.80
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	20.74
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	28.36
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	19.81
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	14.80
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	14.93
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	12.19
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	9.68
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	17.69
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	14.19
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	11.75
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	13.75
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	12.98
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	9.81
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	12.96
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	39.77
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	28.80
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	23.88
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	34.40
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	22.55
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	21.21
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	19.95
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	13.05
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	13.35
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	12.34
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	13.63
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	10.19
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.40
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	39.86
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	29.22
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	25.76
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	27.30
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	27.14
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	25.99
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	35.75
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	21.51
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	25.29
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	19.19
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	17.75
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	15.55
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	9.40
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.