Gene detail

Detailed information of XP_032242887.2 in Nematostella vectensis

Genomic Location: NC_064036.1:1446873...1467911
NR annotation: XP_001637021.3, arginine-glutamic acid dipeptide repeats protein [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5517053

ATGAAAACATCGGGTTACAAGTTCGAAATTGATAGTTCTCCGGTCAAGGATTGCATGCTGGATCAAAACATGAATTCAAGTGCTGAGGACAAGAAAAACAACGAAACCTGTAACAAACCGCGCCGGCGATCGCTAAAAGCGGAAAACGGCGATATGTCAAAGGGAGATAACAATGAGAATAACCAGATCTACACCTCGGAGGACGATATATCCTACCAACCAGGAGATTGCGTTTACATCGACAGTCAGCGGCCTGATGTTCCTTATTTTATCTGCTCTATCAAAGAGTTTCGTACGAGCCGACGTGAGAACATGACTGTGACAGTGAGATGGTATTACCGACCCTCGGAGGTCCCAGAGTCTGTGTACCAGCTTCTTGTGCAAGATCGAAACCATGAACATGGTTCTAAGGATCATATTCTTGAAGACAACCTTGTTAAAGAAAGAGAACTGTTTATTTCTGATGCCACCGATGTTTATCCTGTTTCTGCCCTGAGGGGCAAATGTGTTGTTCGCCCATTCACGGATATGGCAGAGGATTTGAAGCAGTATATAACCAAGGAAGATAGTTTTTTCTACCTGCTCGGTTACAACCCTGAAACAAGGAGGCTTGCGAACACAAAAGGCGAAATACGAGTCGGAGCTAGCCACCAGGCCATCTTACCCGAATGTCAAGAAAAAGTTCCAGATAAGAGCGATTCCAGCAAGGAAACTTGTCGCGAAAAATTGACATGGAGCCCTGTTCTCGAAGACTACGACCTAACCATCTACCTGTGTGCGGCAAGGAGCATGGCGCAGTACGCGGGAATGTGTAATGGCGGTACGCGCGAAGATGGTTTTCGCGCAATGTCTCAGGACGCCACCACATCTAACGCTCTCAATGTGCTTCACGATAGCAAATACGACGCCGCCACCGCTCTTCAAGTATTAGTCAAGAAGCCATACCCCAAAGAGCTCCGCAAGAAATGGTCGGAAGATGATATTAAAAAGTTTGTTAAAGGTCTTCGACAGTTTGGAAAGAATTTCTACAAAATTCACAAAGAACATCTCCCATATAAGTCAACCAGCGAGTTGGTCGAGTACTACTATATTTGGAAGAAGTCTCACTCCGCACAGAGTTCCAGGCCTCACCGCAGACGGCGCCATAATGTGCTTCGCCGGCGGGCACACACAAGAAACAGTAAAACCGTATCAAGTGACTGTGGCAAAGACTACGTTGATTTAACGTCATGTAGCGAGGATGACTACGATAGTGATGACAGCACGGAAAGGGACTTCAGTTTGTACTGTTGTCGCCATTGCTACACCAGCAGCTCACGGAGCTGGCACCACGGCGGCCGAAACAAGGTCATTCTCTGCACGGAGTGTCGAATTTTCCACAAGAAATACGGCAAGCTACCTCCCACGGACTCCACTCGCGATCCACCTCCATACATGTTCAAATCTGTGCTAGAGAAAGACATACGTGAGGAAGACGCGTATTGGACCAACGGCAAAGTGGGACTGCGGAGCCGCCGGAATCTACCAATGGTGCAAAGCACGCTAAGATCTGGACGCAACAAGACTTCGAGTCCGGTAGAGTCAGTGAACACGCCTCGGGACTCGCCTGTTAACGGACGAAGACTCCCGAAGATCGGCAAACCGCCATCGCCTTCTGAGGGAAGCACGAGCAGTTCGGGTAGCACCGCCAATAAGGCGAAGGACAAAAAGGGCAAAGGTAAGAAAAACAAGATCCTGAAGCGTTCACATGAACCCGCGCCTATCAGTCCCGCAAACAACAGCAAGCGACGAAAGTCCAACGACTCGGACGACGACATTCGCGATGACGTCAGCGAATCGAGCAGCGCCACCGGGGGTAGGGACAGTACTCTGCGCGAGTTCGACGAACGCAGCGAGTGCAGCAACGCGAGCGTTAACGACGAGGTCAGCAGTAATAGATCCAACTCGCCTCTAGTCCTCCCCATCATCGACCCCCTCCCGGCCAAGTTCAAACGCGTAGGACCTGGTGAGGAGAACCGGAGCTGTGCGCGCACGGATGTCGTGTACGAACACCCGGAGAGACCGAAGCCGAAGGAGGGTCCGAGAAGTAGCGAGTCTAGCACTGCTAATAGCACAGCCACGAGAACGGAGGCCTCGGAATCCAACTCGGCTGATCGCCAATCATCCCTATCCGTCCATCGCCAATCACCCAAGAACACTCCCGCCGCTAGTGTGACGTCACATTACGAGGCTGCGGTACGGAACATGATGGCCAGCGGAGGTGGCGAGTACCACATGTACCCATCGAACATGCCGTCGCTACTGACGCCCTCTGGTGTGGCTATCCCAGGGTACCCCTCTCACGAGGCCGTGGACTATCGCATGCTCCAGTATGTTTACCCAGGATCTGCGCTCGTACCGGAGTCACGGGATAGCGCCGCGAAATTCGCGGAGGGATTCGAACAATGGTACGCTCCGTACCGCATGGCGCAAATGCAGCCGGGAGGACACCACATTCCGTACCAACTTCTTCACGGGAGATCTCTGGAGCACGGAGCAATGGCGGCAAGGAGTATGGCGTCACAGGCACAGGCGCATGAGGCTTTGCTGAAGAACGCAGCGGCTAGGGGGATTCCCATCGATCCGGTCACCGGGCTACCGGTGGGCTACCCAAACCACCACTCCCACTCGCACATGCACACGCACTTCCACATCCATCCGCATGAACAGCAACTCCAGGCCGCTCAAGCCGCGGCTGCTGCTGCCAACATGGACAGGGCGGCCTACCTGCAGTCGCACCCCGGGCTGGCGGCCTGGAGGAATCAGCAGCTACTAGCGTGGCAGCAACACCCGGAGCTGATGCAGCTGCACGGCGGGGCGTTGGTCTCACCCGAGGACCACCCGCACGCCGCGGCAGGGATTCACGGGCTGGGGTCAACGCCCTTGGACAGACAGCTACAGCAACAGCTGCTGATGAGTCAGCAGTCTAAGTACTCACACCCCCTACAGCAGCAGCAGCACCTTCACGCCCAGGAGGAGGCGTACCTCCGACACTTGCGGCACCACGAGATGCAGCTGAAACAACACGAGGCGTCCACTAACGAGGCGTTCATGTCGACTCTGTTCCGCAAGGAGCACCGTAATCTGCAGAGCCCGTCTCAGCTTGATAATGTTGTGAAAAAGAATTTAGACAGCACTGGCACTTACACTTCGCCCTCAAAGAAACCTGTCACCATAGACTTGTCTGATGATTAG

Transcript

rna-XM_032386996.2

CTCCCAAACCGGAGAAAGTTCGACTAGACGTTTTGGGAATCCGTGTAGTGTGGTAGGGGCGGAGAGTTGTGGTTTGGCTGATTGGCATTTACTTACACTTTATTGTCATTTGACCTTTTGACAAGCAAATCTCTTTATCTACTTCTTCCGAGCGATCAGTCAAATTATACCCCTCGAGCAACGAAGGACAGAGTCAAGTTTGAGAAATCACGCACTCTATTTCATTATTGTGAGGTGTATACAAGCGGATTGAGGCTTTAAGGAAACCTAGAACCGGCAAACCTCCATTTTATGGCGTTTGAAGTCCAGATCAACCAAAACTCAGGGTTTTGGCAAGATCTTGGGTGCCCTGGGCCAAAGTCAACGGTACTTTGAGTTTTTTACGAAGTCTTGGCAAACACACTTGAATCGTGGTAAAAAAGTAAGGACATAACAAAAAGACTTTTGAATCTAGAGCCCTCGTGTGAAATTTGGAGATCCGGGTTCTGCTTGTTGGACATGAAAACATCGGGTTACAAGTTCGAAATTGATAGTTCTCCGGTCAAGGATTGCATGCTGGATCAAAACATGAATTCAAGTGCTGAGGACAAGAAAAACAACGAAACCTGTAACAAACCGCGCCGGCGATCGCTAAAAGCGGAAAACGGCGATATGTCAAAGGGAGATAACAATGAGAATAACCAGATCTACACCTCGGAGGACGATATATCCTACCAACCAGGAGATTGCGTTTACATCGACAGTCAGCGGCCTGATGTTCCTTATTTTATCTGCTCTATCAAAGAGTTTCGTACGAGCCGACGTGAGAACATGACTGTGACAGTGAGATGGTATTACCGACCCTCGGAGGTCCCAGAGTCTGTGTACCAGCTTCTTGTGCAAGATCGAAACCATGAACATGGTTCTAAGGATCATATTCTTGAAGACAACCTTGTTAAAGAAAGAGAACTGTTTATTTCTGATGCCACCGATGTTTATCCTGTTTCTGCCCTGAGGGGCAAATGTGTTGTTCGCCCATTCACGGATATGGCAGAGGATTTGAAGCAGTATATAACCAAGGAAGATAGTTTTTTCTACCTGCTCGGTTACAACCCTGAAACAAGGAGGCTTGCGAACACAAAAGGCGAAATACGAGTCGGAGCTAGCCACCAGgCCATCTTACCCGAATGTCAAGAAAAAGTTCCAGATAAGAGCGATTCCAGCAAGGAAACTTGTCGCGAAAAATTGaCATGGAGCCCTGTTCTCGAAGACTACGACCTAACCATCTACCTGTGTGCGGCAAGGAGCATGGCGCAGTACGCGGGAATGTGTAATGGCGGTACGCGCGAAGATGGTTTTCGCGCAATGTCTCAGGACGCCACCACATCTAACGCTCTCAATGTGCTTCACGATAGCAAATACGACGCCGCCACCGCTCTTCAAGTATTAGTCAAGAAGCCATACCCCAAAGAGCTCCGCAAGAAATGGTCGGAAGATGATATTAAAAAGTTTGTTAAAGGTCTTCGACAGTTTGGAAAGAATTTCTACAAAATTCACAAAGAACATCTCCCATATAAGTCAACCAGCGAGTTGGTCGAGTACTACTATATTTGGAAGAAGTCTCACTCCGCACAGAGTTCCAGGCCTCACCGCAGACGGCGCCATAATGTGCTTCGCCGGCGGGCACACACAAGAAACAGTAAAACCGTATCAAGTGACTGTGGCAAAGACTACGTTGATTTAACGTCATGTAGCGAGGATGACTACGATAGTGATGACAGCACGGAAAGGGACTTCAGTTTGTACTGTTGTCGCCATTGCTACACCAGCAGCTCACGGAGCTGGCACCACGGCGGCCGAAACAAGGTCATTCTCTGCACGGAGTGTCGAATTTTCCACAAGAAATACGGCAAGCTACCTCCCACGGACTCCACTCGCGATCCACCTCCATACATGTTCAAATCTGTGCTAGAGAAAGACATACGTGAGGAAGACGCGTATTGGACCAACGGCAAAGTGGGACTGCGGAGCCGCCGGAATCTACCAATGGTGCAAAGCACGCTAAGATCTGGACGCAACAAGACTTCGAGTCCGGTAGAGTCAGTGAACACGCCTCGGGACTCGCCTGTTAACGGACGAAGACTCCCGAAGATCGGCAAACCGCCATCGCCTTCTGAGGGAAGCACGAGCAGTTCGGGTAGCACCGCCAATAAGGCGAAGGACAAAAAGGGCAAAGGTAAGAAAAACAAGATCCTGAAGCGTTCACATGAACCCGCGCCTATCAGTCCCGCAAACAACAGCAAGCGACGAAAGTCCAACGACTCGGACGACGACATTCGCGATGACGTCAGCGAATCGAGCAGCGCCACCGGGGGTAGGGACAGTACTCTGCGCGAGTTCGACGAACGCAGCGAGTGCAGCAACGCGAGCGTTAACGACGAGGTCAGCAGTAATAGATCCAACTCGCCTCTAGTCCTCCCCATCATCGACCCCCTCCCGGCCAAGTTCAAACGCGTAGGACCTGGTGAGGAGAACCGGAGCTGTGCGCGCACGGATGTCGTGTACGAACACCCGGAGAGACCGAAGCCGAAGGAGGGTCCGAGAAGTAGCGAGTCTAGCACTGCTAATAGCACAGCCACGAGAACGGAGGCCTCGGAATCCAACTCGGCTGATCGCCAATCATCCCTATCCGTCCATCGCCAATCACCCAAGAACACTCCCGCCGCTagtgtgacgtcacattaCGAGGCTGCGGTACGGAACATGATGGCCAGCGGAGGTGGCGAGTACCACATGTACCCATCGAACATGCCGTCGCTACTGACGCCCTCTGGTGTGGCTATCCCAGGGTACCCCTCTCACGAGGCCGTGGACTATCGCATGCTCCAGTATGTTTACCCAGGATCTGCGCTCGTACCGGAGTCACGGGATAGCGCCGCGAAATTCGCGGAGGGATTCGAACAATGGTACGCTCCGTACCGCATGGCGCAAATGCAGCCGGGAGGACACCACATTCCGTACCAACTTCTTCACGGGAGATCTCTGGAGCACGGAGCAATGGCGGCAAGGAGTATGGCGTCACAGGCACAGGCGCATGAGGCTTTGCTGAAGAACGCAGCGGCTAGGGGGATTCCCATCGATCCGGTCACCGGGCTACCGGTGGGCTACCCAAACCACCACTCCCACTCGCACATGCACACGCACTTCCACATCCATCCGCATGAACAGCAACTCCAGGCCGCTCAAGCCGCGGCTGCTGCTGCCAACATGGACAGGGCGGCCTACCTGCAGTCGCACCCCGGGCTGGCGGCCTGGAGGAATCAGCAGCTACTAGCGTGGCAGCAACACCCGGAGCTGATGCAGCTGCACGGCGGGGCGTTGGTCTCACCCGAGGACCACCCGCACGCCGCGGCAGGGATTCACGGGCTGGGGTCAACGCCCTTGGACAGACAGCTACAGCAACAGCTGCTGATGAGTCAGCAGTCTAAGTACTCACACCCCctacagcagcagcagcaccTTCACGCCCAGGAGGAGGCGTACCTCCGACACTTGCGGCACCACGAGATGCAGCTGAAACAACACGAGGCGTCCACTAACGAGGCGTTCATGTCGACTCTGTTCCGCAAGGAGCACCGTAATCTGCAGAGCCCGTCTCAGCTTGATAATGTTGTGAAAAAGAATTTAGACAGCACTGGCACTTACACTTCGCCCTCAAAGAAACCTGTCACCATAGACTTGTCTGATGATTAGATACCTGTCACCATAGACTTGTCTGATGATTAGATACCTGTCACCATAGACTTGTCTGATGATTAGATACCTGTCACCATAGACTTGTCTGATGATTAGATACCTGTCACCATAGACTTGTCTGATGATCAGATACCTGTCACCATAGACTTGTCTGATGATTAGATACCTGTCACCATAGACTTGTCTGATGATCAGATAGAATGTGATGAATGATGTCTGATGAATCCCTGTAGCTGCATCACTCTACCCATCACCCCTGCGATCTTGTGAAGCCTTGATTCGCTACACTTTAAGAGATGAAAAGAAACGTAGATATTTTCGAGCTAATATTGCACACGGGGAATCAACGATCAATCAATTACGCAACGTtcctactactactactacgtTCCTACTACCAATATTCTACTTCCTTGCTTTTGATTATTCCTCTGTATGGACAATAACATAACGCAAGGAATCGTGGGTAAAGTTGCCATCTGCCTTTAAATTACACTCGTCCGCAGCTCTGAATTAGCAACCACCACACTGAACGCGTGGTATCCTTCCTAAGAAACTGCTCACTGGTAGTCTTTGTTTTAGGTGTGCCTACAAGCTTAGTGCTAAATCTTTGTTCTGCTACCCTTATGATTCTTTGtcatttctctgtatttctcTATGAAATAAGCCAGAATTTAGTTTCTCCTTTTAGATGAGTTAAATGGGTCAGAATAATAAAGGATAGGGAATTATTATAAATGTTCTTTATACGAAGAATATATTTAGTGTCTAAAACCGAACTTATGTATTTAAAGAGGAGATGTAATTTATTTTGTTGGGAATCGTTATGGATAAAATATTGGTCTAAATTTATCATTAGATGAACGCGGTGAAGGGTTAGATGATAAAagctagattttttttacagaatgTTTATTTGCACCATTTTCGTAAGATGATCACTTTCGATAACCTTACACAAAATTcgagttttttttcataatcaGCACAAAAGGAGTTAATAATTCGTTTCTATTTTGTTATCTAAAGCATATTATTTTGCGTTCTTGTAAATAGCAGATATCAAGGGCGTTTGTACTCAAGTCAACTTACAACATGAACGTCCGAAAATTGGACTCTAAACACTTGGAAAACTCGCCTTTTTCTGACTCGGGCACGTTTTCGTTTGTCAACAAAAGTTTCTACCATTTgcattaatagaaaaaatggTTCAAAGTTTTGATACTCCCTTTTCTCTACTTCGTTTTTAAGATACATACAACATAATAACTAGATATAATTTATTCGCACAATCGACTATacagaatatatatatatattgtacaTATCATTCGAAACTGTGTGAAATAAAGTCATGATTGGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q62901	Arginine-glutamic acid dipeptide repeats protein OS=Rattus norvegicus OX=10116 GN=Rere PE=1 SV=2
Q80TZ9	Arginine-glutamic acid dipeptide repeats protein OS=Mus musculus OX=10090 GN=Rere PE=1 SV=3
Q9P2R6	Arginine-glutamic acid dipeptide repeats protein OS=Homo sapiens OX=9606 GN=RERE PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003001 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00320 all species →	GATA	GATA zinc finger	Domain	Interproscan
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF01448 all species →	ELM2	ELM2 domain	Family	Interproscan
PF01426 all species →	BAH	BAH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000679 all species →	Domain	Zinc finger, GATA-type	Interproscan
IPR000949 all species →	Domain	ELM2 domain	Interproscan
IPR001025 all species →	Domain	Bromo adjacent homology (BAH) domain	Interproscan
IPR017884 all species →	Domain	SANT domain	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR043151 all species →	Homologous_superfamily	Bromo adjacent homology (BAH) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13859 all species →	ATROPHIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05628	RERE; arginine-glutamic acid dipeptide repeats protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032242887.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

45TPM > 0

16Conditions

35.7Max TPM

21.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	29.13	34.97
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	21.21	30.88
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	23.89	26.04
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	13.92	14.81
whole 6 week old aboral regenerate · regenerate uncut	3	3	16.88	18.02
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	10.61	19.84
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	29.49	32.86
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	25.36	32.05
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	19.73	23.98
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	19.25	20.55
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	18.36	19.85
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	32.03	35.69
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	26.65	27.80
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	19.08	34.25
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	19.59	23.01
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	11.16	17.40

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	34.97
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	32.25
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	20.17
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	30.88
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	18.54
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	14.20
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	26.04
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	24.86
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	20.76
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	14.81
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	13.96
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	12.99
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	18.02
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	16.80
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	15.82
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	19.84
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	11.99
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	32.86
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	30.01
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	25.62
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	32.05
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	24.15
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	19.88
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	23.98
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	20.20
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	15.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	20.55
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	20.15
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	17.05
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	19.85
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	17.72
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	17.49
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	35.69
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	33.07
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	27.33
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	27.80
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	27.31
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	24.84
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	34.25
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	22.98
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	23.01
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	20.69
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	15.08
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	17.40
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	16.09
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.