Gene detail

Detailed information of XP_032242989.2 in Nematostella vectensis

Genomic Location: NC_064036.1:1267252...1302612
NR annotation: XP_032242989.2, xanthine dehydrogenase/oxidase-like [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5517059

ATGGAGCAAAGCAATGTGGAGCCTCTGGTCAGGACTTTCGAATGCACGGTTTGCAGAGCGAGATTGACTCCAAGGAATGGTCCCCTGCCTAGTGGTGTGTACAGTGGGACATGCGGGGTTTGCCGTGCTCCATTTAAGTTCTGGTCAGTAGAGAACCCTGTGAAGAAAGTCAGCTTTTCTCTAAATGGAGTCAAGTACACTGTCATGAATCCAGATGCTCTCATGAGTCTGAATGAGTGGATAAGAAGCCAGCCACATTTAACAGGAACCAAAGTAATGTGTAGAGAGGGTGGCTGTGGTTGTTGTACTGTTGTTGTGACCAAAGCTGATCCAGTGACCAACAAACCAATGACGATGCCAGTAAACTCGTGTCTCTGGCCATTATGCAATGCTGATGGTGTATCTATTACGACCACAGAGGGGATTGGAAACAAAGATGATGGTTTCCATGCTATCCAGGAACGCTTAGCAGATCATAATGGTAGCCAGTGTGGCTACTGTTCTCCCGGTATGGTCATGAATATGTATGGCCTGTTAAAAACGAATGCTTTTCCAAGCAAGCAGGAGATTGAAAATCACTTTGATGGGAATATCTGTCGATGCACAGGCTACAGACCTATTTTAGATGCAATGAAGACATTTGCAAAGGATGCCGACCCTCTTGACATTGAGGATGTTTCTAGGCAGTGTTGTACAAGTTGCCCAAGGAAGTCAGGATTAAACACAGTGATGGCTATGGACAATGAACCTACACCCTGGTATAGTCCCACAACCCTGAAGGATCTTTACACACTGGCCGCCATGAACAAAGACAAGAGAATAAGATTTGTCGGTGGAAATACAGGATTGGGTATTTACAAAGACGATGGTCCCTATGACATTTACATTTGCATCGATCAAATTCCAGAATTGAAAATGTGCAAGGTGTCTGCTGACAGCCTTGCGGTTGGTTCGGCAGTCACACTTTCCACGCTCATCACCACCTTAGATGATCACGCCACCAGTTATCCTGCATACAAACCGCTAGCTGAACACGCCAAAAAGGTCGCTAATGTTCCAGTAAGAAATGTGGCGACGGTTGGAGGTAACCTCATGTTGACCCACGATCATCCGTATTTTCTATCCGACCTGATGACTATCTTTGAGACGATTGGTGCTCGGGTTGTTATCGGGGATGCTGTCCATGGCTCTTCAGATGAGTACACTCTCATGAGCTTCCTGAACATGGACATGAAATCCAAGATTCTGGTCGGGTTGATGATTCCATTGCCTACTCCTGCGACGACGTTTGTGCGCACCTACAAAGTGATGCCCAGAGCACAGAATGCGCACGCTTATGTGAATGCCGGCTTCGCCACCACTCTGGACAAGGCATCCTTAACTGGCTCGTCCTTCCGTCTTGTTTACGGAGGCATCGGCCCCTACGCGATACACGCCACAAAGACGGAAACATACCTGGAGGGGAAACCGCTCACGCAGTTAGACACTCTGAAAGGGGCCCTAGCAATATTAAGCTCTGAGTTGTCTCCCGACCCCTCTCCCGCTAGTTCCAGCCCTGCTTACCGCAAGAGCCTGGGTTTGAGTCTTTTTTACAAATTTTACCTTGCAATGCTCGGCGATAAAGCATCGGCTCGTTTGCGGTCAGCGGCCGTTCCCTACACGCGGGCAATCTCATCCGGGACTCAGAATTATGACAGTCACCCTGAGCTCTATCCGCTGACCAAACCTATGACGAAACTCTCGGCCAAGCTCCAGGCGTCAGGTGAGGCGCAGTATACCAATGATATACCAGCCCAGAATGGCGAGCTGTACGCCGCTTTCGTCCTCGCTTCTCAGGGTAACTGCAAAATCGCTTCTATTGATGCAACAATTGCGAAGGCATTGCCGGGAGTCGTCGAGTTTATGTCAGCATCGAGCATTCCACAGCAAGGCGTCAACAATTTCATGCCAACTCCTAACGACCCTGAGGAGATATTCTGCAGCGGAGAAGTTCTGTTTGCTGGCCAAGCCATTGGTCTCATCTTGGCAGACTCCCAGAGACACGCTGACAAGGCAGCCGAAGCCGTCAAGATCGTGTACAAAGACATCGCCACGCCTATCCTGTCAATCAAAGCCGCCATCGCGGCTAAGTCATTCTTCCCAGCCATCGCTCCAATGACCGTAGGAGATGCTGAAGGAGCTATCAAGACAGCTAGTCATGTGATTTCTGGGGAAATTGCCATGGACACACAGCACCATTTTCACATGGAAACGCAGGTGTGTAGGTGCGTCCCGGAGGAGGATGGTATCACGGTTCACTCTGCCACTCAGTGGATTGATCTGCTGCAGTCTGCCGTTGCTCAAGCCCTAGGATTTTCCGTTAACAAAGTTCACGTGGATGTCAAGCGGTGCGGTGGTGCTTATGGAGGAAAGGCGTCCCGTTCGCTACACCCGGCCACCGCTGTTGCCCTCGCTGCTCACGTCTTTAAAAGGCCTGTGCGAATGATGATGAATTTCAACACGAACATGAAGATGGTCGGCAAGAGAACTCCATACCTCGTTAAATACAAGGTGGGAACAGATGACTCTGGCACGCTCAAGGGAATTGATATGACCATGTATGCTGATTACGGCTGTTCTGTCAATGACAGCGACATGGGATCAACGTACAACTTCTGTGATAATGCTTACTACTGCGCCAACTGGAAAATCAACGCGATTCCGTGCCGCACCAACACTGCTAGTAACACATGGTGCCGGGCGCCAGGGTCTATCCAGGCGGTTTTTATCATGGAGTCTATAATGGAACACGTTGCCAAGTCACTTGGCAAGACGCCAGAAGATGTACGCCAAGTCAACCTCTACCAAAAAAATCAGACTATGCCAAGTGGCCAGGCCTTGAAGTACTGTAATATTCGCACTTTGTGGCAAGACTTGCAGGAGACTTCAGAATTTCTTAAACGAAAGGCAGAGGTGGAGAGTTTCAACAAGGCAAACCGTTGGAGAAAAAGAGGACTTTCCCTTGTACCGCTGAGGTGGAGTGCCATGTGGGGCAATGGCAGATATGGTGCCTTGGTCTCAGTGTTTAATAACGATGGAACAGTGCAAATCACTCACGGGGGAATCGAGGTCGGACAGGGAATCAATACAAAGGTTGTGCAAGTAGCGGCCCACACCCTTGGGATTCCTGTGGATTACATATCAATCCAGGCGACCACAAGCTTCACAACCCCAAACAATAACCCCACCGGTGGTAGTATTGCTTCAGAGATGGCCTGTAAGGCCGTACTGCAGTGCTGCGAAGCCCTGAACAACCGCCTTACGCCCATCCGACAGAAGTATAAACCGAAAAACTGGCAAGAGCTCATCAGCAAAAGCTACAGCGACGGTGTGGATTTGTCAGCCAAAAGCATGTTTTTTGACCCGGAGATGTACCCAATTCAATACAGCTCGTACGGTGCCACGTGCACTGAAGCTGAACTCGACGTCCTGACGGGGGAGAGTCAAATACTTCGAACAGACATCCTCTACGACTGCGGCCAGAGCATGAATCCAGAGCTAGATGTCGGTCAAGTAGAAGGTGCTTTCATCATGGGACTGGGACTTTGGCTGATGGAGAAAGTCAAATACAATCCTCAAACTGGACAAGAGCTCACATCATCCACTTGGGAATATAAGCCACCAAGCTCCAAGGACATCCCTATCGATTTGAGGGTCACTCTACTGAAGAAAGCCACAAACCCACTAGGGATCCTTGGATCGAAAGTTGTGGGTGAGCCTCCGATGTGCATGGCCGCCTCTTGTCTGTTCGCCGTAAAGCACGCCATCCAAAGCGCGCGAGAAGAGATTGGCAAAGACAGTGAATATTTTCCATTGGATGGTCCTGCTACCGTGGACGCTGTCCAACAAGCGTGTCTTGTAGATCCTGCTCAGTTTTCTCTTTAA

Transcript

rna-XM_032387098.2

CAATCTACGTCCGTGGGAATTTCTTCCGGTCTCTGGCACAACTCGACTTTGATCATTTATGCTAACTTGAGAGGCAGGACATGAGCAGATGAGGAGCTACTCATAGTTTGTTTTGATCAGTCTGCAATGGAGCAAAGCAATGTGGAGCCTCTGGTCAGGACTTTCGAATGCACGGTTTGCAGAGCGAGATTGACTCCAAGGAATGGTCCCCTGCCTAGTGGTGTGTACAGTGGGACATGCGGGGTTTGCCGTGCTCCATTTAAGTTCTGGTCAGTAGAGAACCCTGTGAAGAAAGTCAGCTTTTCTCTAAATGGAGTCAAGTACACTGTCATGAATCCAGATGCTCTCATGAGTCTGAATGAGTGGATAAGAAGCCAGCCACATTTAACAGGAACCAAAGTAATGTGTAGAGAGGGTGGCTGTGGTTGTTGTACTGTTGTTGTGACCAAAGCTGATCCAGTGACCAACAAACCAATGACGATGCCAGTAAACTCGTGTCTCTGGCCATTATGCAATGCTGATGGTGTATCTATTACGACCACAGAGGGGATTGGAAACAAAGATGATGGTTTCCATGCTATCCAGGAACGCTTAGCAGATCATAATGGTAGCCAGTGTGGCTACTGTTCTCCCGGTATGGTCATGAATATGTATGGCCTGTTAAAAACGAATGCTTTTCCAAGCAAGCAGGAGATTGAAAATCACTTTGATGGGAATATCTGTCGATGCACAGGCTACAGACCTATTTTAGATGCAATGAAGACATTTGCAAAGGATGCCGACCCTCTTGACATTGAGGATGTTTCTAGGCAGTGTTGTACAAGTTGCCCAAGGAAGTCAGGATTAAACACAGTGATGGCTATGGACAATGAACCTACACCCTGGTATAGTCCCACAACCCTGAAGGATCTTTACACACTGGCCGCCATGAACAAAGACAAGAGAATAAGATTTGTCGGTGGAAATACAGGATTGGGTATTTACAAAGACGATGGTCCCTATGACATTTACATTTGCATCGATCAAATTCCAGAATTGAAAATGTGCAAGGTGTCTGCTGACAGCCTTGCGGTTGGTTCGGCAGTCACACTTTCCACGCTCATCACCACCTTAGATGATCACGCCACCAGTTATCCTGCATACAAACCGCTAGCTGAACACGCCAAAAAGGTCGCTAATGTTCCAGTAAGAAATGTGGCGACGGTTGGAGGTAACCTCATGTTGACCCACGATCATCCGTATTTTCTATCCGACCTGATGACTATCTTTGAGACGATTGGTGCTCGGGTTGTTATCGGGGATGCTGTCCATGGCTCTTCAGATGAGTACACTCTCATGAGCTTCCTGAACATGGACATGAAATCCAAGATTCTGGTCGGGTTGATGATTCCATTGCCTACTCCTGCGACGACGTTTGTGCGCACCTACAAAGTGATGCCCAGAGCACAGAATGCGCACGCTTATGTGAATGCCGGCTTCGCCACCACTCTGGACAAGGCATCCTTAACTGGCTCGTCCTTCCGTCTTGTTTACGGAGGCATCGGCCCCTACGCGATACACGCCACAAAGACGGAAACATACCTGGAGGGGAAACCGCTCACGCAGTTAGACACTCTGAAAGGGGCCCTAGCAATATTAAGCTCTGAGTTGTCTCCCGACCCCTCTCCCGCTAGTTCCAGCCCTGCTTACCGCAAGAGCCTGGGTTTGAGTCTTTTTTACAAAtTTTACCTTGCAATGCTCGGCGATAAAGCATCGGCTCGTTTGCGGTCAGCGGCCGTTCCCTACACGCGGGCAATCTCATCCGGGACTCAGAATTATGACAGTCACCCTGAGCTCTATCCGCTGACCAAACCTATGACGAAACTCTCGGCCAAGCTCCAgGCGTCAGGTGAGGCGCAGTATACCAATGATATACCAGCCCAGAATGGCGAGCTGTACGCCGCTTTCGTCCTCGCTTCTCAGGGTAACTGCAAAATCGCTTCTATTGATGCAACAATTGCGAAGGCATTGCCGGGAGTCGTCGAGTTTATGTCAGCATCGAGCATTCCACAGCAAGGCGTCAACAATTTCATGCCAACTCCTAACGACCCTGAGGAGATATTCTGCAGCGGAGAAGTTCTGTTTGCTGGCCAAGCCATTGGTCTCATCTTGGCAGACTCCCAGAGACACGCTGACAAGGCAGCCGAAGCCGTCAAGATCGTGTACAAAGACATCGCCACGCCTATCCTGTCAATCAAAGCCGCCATCGCGGCTAAGTCATTCTTCCCAGCCATCGCTCCAATGACCGTAGGAGATGCTGAAGGAGCTATCAAGACAGCTAGTCATGTGATTTCTGGGGAAATTGCCATGGACACACAGCACCATTTTCACATGGAAACGCAGGTGTGTAGGTGCGTCCCGGAGGAGGATGGTATCACGGTTCACTCTGCCACTCAGTGGATTGATCTGCTGCAGTCTGCCGTTGCTCAAGCCCTAGGATTTTCCGTTAACAAAGTTCACGTGGATGTCAAGCGGTGCGGTGGTGCTTATGGAGGAAAGGCGTCCCGTTCGCTACACCCGGCCACCGCTGTTGCCCTCGCTGCTCACGTCTTTAAAAGGCCTGTGCGAATGATGATGAATTTCAACACGAACATGAAGATGGTCGGCAAGAGAACTCCATACCTCGTTAAATACAAGGTGGGAACAGATGACTCTGGCACGCTCAAGGGAATTGATATGACCATGTATGCTGATTACGGCTGTTCTGTCAATGACAGCGACATGGGATCAACGTACAACTTCTGTGATAATGCTTACTACTGCGCCAACTGGAAAATCAACGCGATTCCGTGCCGCACCAACACTGCTAGTAACACATGGTGCCGGGCGCCAGGGTCTATCCAGGCGGTTTTTATCATGGAGTCTATAATGGAACACGTTGCCAAGTCACTTGGCAAGACGCCAGAAGATGTACGCCAAGTCAACCTCTACCAAAAAAATCAGACTATGCCAAGTGGCCAGGCCTTGAAGTACTGTAATATTCGCACTTTGTGGCAAGactTGCAGGAGACTTCAGAATTTCTTAAACGAAAGGCAGAGGTGGAGAGTTTCAACAAGGCAAACCGTTGGAGAAAAAGAGGACTTTCCCTTGTACCGCTGAGGTGGAGTGCCATGTGGGGCAATGGCAGATATGGTGCCTTGGTCTCAGTGTTTAATAACGATGGAACAGTGCAAATCACTCACGGGGGAATCGAGGTCGGACAGGGAATCAATACAAAGGTTGTGCAAGTAGCGGCCCACACccttgggattcctgtggattaCATATCAATCCAGGCGACCACAAGCTTCACAACCCCAAACAATAACCCCACCGGTGGTAGTATTGCTTCAGAGATGGCCTGTAAGGCCGTACTGCAGTGCTGCGAAGCCCTGAACAACCGCCTTACGCCCATCCGACAGAAGTATAAACCGAAAAACTGGCAAGAGCTCATCAGCAAAAGCTACAGCGACGGTGTGGATTTGTCAGCCAAAAGCATGTTTTTTGACCCGGAGATGTACCCAATTCAATACAGCTCGTACGGTGCCACGTGCACTGAAGCTGAACTCGACGTCCTGACGGGGGAGAGTCAAATACTTCGAACAGACATCCTCTACGACTGCGGCCAGAGCATGAATCCAGAGCTAGATGTCGGTCAAGTAGAAGGTGCTTTCATCATGGGACTGGGACTTTGGCTGATGGAGAAAGTCAAATACAATCCTCAAACTGGACAAGAGCTCACATCATCCACTTGGGAATATAAGCCACCAAGCTCCAAGGACATCCCTATCGATTTGAGGGTCACTCTACTGAAGAAAGCCACAAACCCACTAGGGATCCTTGGATCGAAAGTTGTGGGTGAGCCTCCGATGTGCATGGCCGCCTCTTGTCTGTTCGCCGTAAAGCACGCCATCCAAAGCGCGCGAGAAGAGATTGGCAAAGACAGTGAATATTTTCCATTGGATGGTCCTGCTACCGTGGACGCTGTCCAACAAGCGTGTCTTGTAGATCCTGCTCAGTTTTCTCTTTAATATGAACCAGGCACAGGAGAGAAGACTCAAAAAAGAGATCGCAAATGCATTATATTATACCCAGAGACAAATGGAGCCTATTTACTTAGAGGATTTTAGACGACCAAACGACACACCATGTATTTACTCAAAGCAAAGTGAGTCGATTTACTCTTACTGGACTACATGACCAAAATAAGTCTCATAAATACAAAATTCTTTCAAACCATACTATAGAGTAGAGACAAAGTAGAAATATAAGTAAAAgcgcaacaacaacatcaccaACCAAAGGCACAAACACACAGCATCAATAATAACAGCACACCCACGAAAACCACAGCAACAAAGTAGCGACAGTATCAACAACAGTACCCCCAACAAAACCATAGCAACCAGGTAGCGGCATCAATAACAACTATTGCATCTACAACGACTTCGTCTTGTGTTAAGAACCATACTATAGAGTAGAGACAAGGTAGAAATATAAGTAAAAGCACATGTAGGTAAAAATTTTCAAATGAAATAAACTGAATATTTTAAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P47989	Xanthine dehydrogenase/oxidase OS=Homo sapiens OX=9606 GN=XDH PE=1 SV=4
P47990	Xanthine dehydrogenase/oxidase OS=Gallus gallus OX=9031 GN=XDH PE=1 SV=1
P22985	Xanthine dehydrogenase/oxidase OS=Rattus norvegicus OX=10116 GN=Xdh PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001251 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20256 all species →	MoCoBD_2	Molybdopterin cofactor-binding domain	Domain	Interproscan
PF00111 all species →	Fer2	2Fe-2S iron-sulfur cluster binding domain	Domain	Interproscan
PF01315 all species →	Ald_Xan_dh_C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	Domain	Interproscan
PF00941 all species →	FAD_binding_5	FAD binding domain in molybdopterin dehydrogenase	Family	Interproscan
PF02738 all species →	MoCoBD_1	Molybdopterin cofactor-binding domain	Domain	Interproscan
PF03450 all species →	CO_deh_flav_C	CO dehydrogenase flavoprotein C-terminal domain	Domain	Interproscan
PF01799 all species →	Fer2_2	[2Fe-2S] binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046867 all species →	Domain	Aldehyde oxidase/xanthine dehydrogenase, second molybdopterin binding domain	Interproscan
IPR036683 all species →	Homologous_superfamily	CO dehydrogenase flavoprotein, C-terminal domain superfamily	Interproscan
IPR016167 all species →	Homologous_superfamily	FAD-binding, type PCMH, subdomain 1	Interproscan
IPR001041 all species →	Domain	2Fe-2S ferredoxin-type iron-sulfur binding domain	Interproscan
IPR036856 all species →	Homologous_superfamily	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily	Interproscan
IPR000674 all species →	Domain	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead	Interproscan
IPR002346 all species →	Domain	Molybdopterin dehydrogenase, FAD-binding	Interproscan
IPR008274 all species →	Domain	Aldehyde oxidase/xanthine dehydrogenase, first molybdopterin binding domain	Interproscan
IPR037165 all species →	Homologous_superfamily	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily	Interproscan
IPR016169 all species →	Homologous_superfamily	FAD-binding, type PCMH, subdomain 2	Interproscan
IPR016166 all species →	Domain	FAD-binding domain, PCMH-type	Interproscan
IPR005107 all species →	Domain	CO dehydrogenase flavoprotein, C-terminal	Interproscan
IPR016208 all species →	Family	Aldehyde oxidase/xanthine dehydrogenase-like	Interproscan
IPR002888 all species →	Domain	[2Fe-2S]-binding	Interproscan
IPR036010 all species →	Homologous_superfamily	2Fe-2S ferredoxin-like superfamily	Interproscan
IPR036318 all species →	Homologous_superfamily	FAD-binding, type PCMH-like superfamily	Interproscan
IPR012675 all species →	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan
IPR036884 all species →	Homologous_superfamily	[2Fe-2S]-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11908 all species →	XANTHINE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00106	XDH; xanthine dehydrogenase/oxidase	EC:1.17.1.4 EC:1.17.3.2	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032242989.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

42TPM > 0

16Conditions

15.4Max TPM

7.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	12.09	15.40
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	8.09	11.34
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	9.22	10.30
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	8.71	10.33
whole 6 week old aboral regenerate · regenerate uncut	3	3	8.33	9.87
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	6.49	9.93
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	7.69	12.64
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	7.17	7.94
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	6.71	7.29
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	6.56	7.57
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	7.35	8.92
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	9.57	10.36
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	9.03	9.94
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	3.46	10.37
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	12.10	13.58
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	3.08	9.24

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	15.40
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	11.46
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	9.41
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	11.34
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.56
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.38
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	10.30
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	8.98
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	8.36
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	10.33
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.73
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	7.09
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	9.87
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	8.18
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	6.94
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	9.93
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	9.54
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	12.64
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	10.44
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	7.94
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	7.32
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	6.26
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	7.29
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	7.00
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	5.83
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	7.57
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	6.71
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	5.39
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.92
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	7.35
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	5.79
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	10.36
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	9.27
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	9.08
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	9.94
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	9.08
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	8.06
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	10.37
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	13.58
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	13.23
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	9.49
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	9.24
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.