Gene detail

Detailed information of XP_032242990.2 in Nematostella vectensis

Genomic Location: NC_064036.1:1254624...1265877
NR annotation: XP_032242990.2, vicilin-like seed storage protein At2g18540 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032387099.2

AATGCATGGTGGTTATCGTACGAAGGTtcataacaacaacaagatGGCGTTCAATCAATTTCAGCAGTATCAGGCCGCCTGGCAATCGCAGCCTTTACCGCCAGGATGGGAGGCTAGATACGACAACAACGTCGGTAGATATTATTTTATTCACCATGctacaagaacaacaacatgGAAAGATCCCCGTTTGCAGCAGCAAGAACAGATTGCAATGAATAACTTTGGGCAGCAACACACTGCAGCTCAACCCATGAATCAGCCTGCGGCTCCTGTGGCTCAACAACCTGCTGCAGCCCAACCTTCACGTCAACAGGAAACATCTTTTACAACAGAAAGGCAGAGAAGTGAAAGTTTGGCCTCATTGGAGTCTTATGGATTTGACTTTGATGAACCAAAAGAAAAGACGGAAAGTGAGAAAGCTAATTTACGATCCCAAATGAAGATTGAGTTCTCTAGCATCTCTGATGAGGTGATCGCTATTTCCCTTGAAAGTGCAGATTACAATGAAAATGATGCTAGGGAAATACTACGGACATTGAAAAgagaagaagaagaaagAATGCGTCGTGAAGAGATACAGAGGAGACAAGAAGAGGAGGAAAGGCGGGAGCGAGAGAGGCAAGAACAGGAGGAGAGGTGGCAAAGGAAGGAACAACGCCAAAAAGAGGAGCGGGAGAGAGTAGAGAGGGAGGCGAAAAAGAAGGAATTATCAGCCAAGTTCAAGCGAGATTATGGTGAAGCTATCGATGAAGCTGTGATTACCATGACCTTAGAAAGTATGAATTATGAGGAGGACGATGTACGGAGAATTTTAGAGGACCTTAAAGTCGAGCAAGAGGAGCAAAAGAAACGAATGGCACGGGAATTAGAAGAAGCAAAGAAGAAAGCTGCCGCCAAAGTTGCTAAAGAAAAGAGCGCTAAACCCAAAGAGAGCAAAAAACCCGAAACCAAGAAACCGGATACAGCCCCAAAGGCCACAATCAAAGCTACCCCTAAACCCTCTGCTCCAGTCGCCAGTACATCTAAGACAACACCAGCGAGAGGAAGAGCCGGGCCATCCAAGACAAGGCAGCCAATCAAAACAAAGCCAAAACCTCCAGAGTTCAAGTCACCTCTACGCACGGCTTCAACTGGGGTCGACCCCGCCCTTGCAAAGGGGCCAAACGCCTCTCTACTCATtcctcagtgggtcCAGACAAAAGGGCCTGCTGGATCTAATCGTCAAGGACCAAACCGAGCCCTGGTGCAAGGCCCATCGTCACACCAAACTCGGGGCAGAGAGGTGCTAAACAAAGGTCCACAGCCGGGACTTTGCCATGGCCCTCAGCACAGTCTGGTACAAGGGTCTATGTACACGGTGATCCAAATATAGATTACGGTGACGTTAccggatgaaaaaaaaaaaacgatttatTTACATGGGCTGCAAATGTTCATCAACACAATTATAGTTCACCTTTAGCTTATATCGTAGGTTGACGTCATATCGTGATAATATAccgcaactttttttttccaatttagTGTGTAAACGCTAATATGGACCCAAAACTGTACCTTCAGATAACTAAGAGTAATCACTTGTCACAGCAATATGATCGGTgaaaaggatataaagacGTGAAAATATCGCATCGCTTTTTCTCGTCAAGTTAACCAAAGACGAAGCATTGTATTCCATTCTATAGTAGAGTTAGTGCACAGTTAGTATAGTACTATAGTACTAAGTGGAGTATGCTTGtcaacagggtctttgttCGTTTCATCGGTTACAGACCGCCCGAAGATATCGGATACTTCGTGCCGACGAAAGATGCACAAAGTGCATCGCAAGCCCCGGAGATGCAAGAAAAACTTCTACTGTAACTCTCTtgttgacaaacataatccTCTTTATAATACGAGCCCTGTTTATTTTCCTTATAATATCAATCGAGCGTTAAATAGGAATCTATTCTGATGTGCTCCCTTGGTGTAAATAGACGACGGAAAACATTAAATACCGACtacaaagctcaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q19404	Yes-associated protein homolog 1 OS=Caenorhabditis elegans OX=6239 GN=yap-1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006948 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00397 all species →	WW	WW domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001202 all species →	Domain	WW domain	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR051105 all species →	Family	WWC/KIBRA Hippo Pathway Regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14791 all species →	BOMB/KIRA PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0019900 all species →	Molecular Function	kinase binding	Interproscan
GO:0035330 all species →	Biological Process	regulation of hippo signaling	Interproscan
GO:0046621 all species →	Biological Process	negative regulation of organ growth	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032242990.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032242990.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

42TPM > 0

16Conditions

39.7Max TPM

23.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	32.07	36.09
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	25.44	35.36
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	23.88	27.07
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	27.01	28.71
whole 6 week old aboral regenerate · regenerate uncut	3	3	25.34	30.54
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	28.83	38.75
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	21.31	35.57
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	27.60	38.29
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	15.16	26.82
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	21.34	24.14
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	23.01	26.08
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	27.63	32.04
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	26.33	26.91
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	17.64	31.73
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	23.18	39.74
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	10.58	31.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	36.09
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	30.32
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	29.79
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	35.36
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	21.22
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	19.73
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	27.07
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	23.18
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	21.38
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	28.71
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	27.02
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	25.29
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	30.54
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	25.86
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	19.61
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	38.75
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	24.38
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	23.37
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	35.57
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	28.35
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	38.29
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	25.48
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	19.03
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	26.82
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	18.65
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	24.14
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	21.82
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	18.06
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	26.08
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	24.13
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	18.82
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	32.04
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	27.67
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	23.19
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	26.91
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	26.55
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	25.54
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	31.73
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	21.18
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	39.74
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	29.79
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	31.75
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.