Genomic Location: NC_064034.1:4065419...4076688
NR annotation: XP_032243019.2, eukaryotic translation initiation factor 2D isoform X3 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5517171 |
| Transcript |
| rna-XM_032387128.2 |
| Protein |
| XP_032243019.2 |
| UniProt accession | Description |
|---|---|
| P0CL18 | Eukaryotic translation initiation factor 2D OS=Oryctolagus cuniculus OX=9986 GN=EIF2D PE=1 SV=1 |
| P41214 | Eukaryotic translation initiation factor 2D OS=Homo sapiens OX=9606 GN=EIF2D PE=1 SV=3 |
| Q5RA63 | Eukaryotic translation initiation factor 2D OS=Pongo abelii OX=9601 GN=EIF2D PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003810 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01253 all species → | SUI1 | Translation initiation factor SUI1 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR039757 all species → | Family | Eukaryotic translation initiation factor 2D | Interproscan |
| IPR001950 all species → | Domain | SUI1 domain | Interproscan |
| IPR036877 all species → | Homologous_superfamily | SUI1 domain superfamily | Interproscan |
| IPR003121 all species → | Domain | SWIB/MDM2 domain | Interproscan |
| IPR039759 all species → | Domain | Eukaryotic translation initiation factor 2D, SUI1 domain | Interproscan |
| IPR015947 all species → | Homologous_superfamily | PUA-like superfamily | Interproscan |
| IPR036885 all species → | Homologous_superfamily | SWIB/MDM2 domain superfamily | Interproscan |
| IPR048248 all species → | Domain | Eukaryotic translation initiation factor 2D-like, PUA RNA-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12217 all species → | EUKARYOTIC TRANSLATION INITIATION FACTOR 2D | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0001731 all species → | Biological Process | formation of translation preinitiation complex | Interproscan |
| GO:0003743 all species → | Molecular Function | translation initiation factor activity | Interproscan |
| GO:0006413 all species → | Biological Process | translational initiation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K15027 | EIF2D; translation initiation factor 2D | - | Translation factors | ko03012 | deepkoala |
Transcript abundance of XP_032243019.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
