Gene detail

Detailed information of XP_032243066.1 in Nematostella vectensis

Genomic Location: NC_064034.1:4898401...4927425
NR annotation: XP_032243066.1, striatin-interacting protein 1 homolog [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC116621173

ATGGACGGCGGTGATCGAAAGCAGCGCGGAATCCCTAAACTGCGCGATATTCTACGCCGCCAGCGCCGGGAATCCGAGGGTCAGATAGACACATCTCCCGATGTAGAGTTTGAGTACGATGATACGGACGAACTGTCTGCCGAGATCGCCGAGTTGTACAGTTATACTGAGGAGGCAGAATTCGCACTAAACAAGGACGCATTTGAAAACGACTTCTATCAGCATGAGTCTTGCAAGTGGATCCGCTGTGGGGAGAAGTCACGGCGTGCCTACATCCTGAGCATACTAGACCATGTGGAGTCTGTTGACCCTGATGTCAGGGTCTCTTCTGCTAGGATCTTGCTTTATTTAGCACAAGGAAACTTTGCAGAAGTGAGCACTAAAGAAGAACAAGAATACTGGACAAATCAGAATATCCTCCTTCTCTATGAGACTGAGACATTCCCTGTCATTGTGCAGATGTTACAAATGGAGATTGATGACAGTCAGGCTGCAACATCAGCCCTTCACAAGCCTTCAATATCCATGGTTGATAGCATTAATATCAGAATCTATTTGAATTTGCTTTACACAATGGTTGAGTGGATGCGTGTGCCACACAAGACTGACACACCAGAATCCAAGTCAATCAAACACTTCTTCTGCCAGGAATTAAGCCTGCCTATTGTAGGTGATGACTGCCTAGCTGTCATACTGTTTGAGATGGTTCTCAAGTTCTGTGCAGGCAGCTCTCCTCATTTCCCCATTAAGAAAGTGCTGATCATGCTATGGAAGACTATTCTTGCTTCTTTGGGTGGAATCAAGCAGATTGAAGTGCTTAAACGAGAGGCAAGAGTCCGAGCTGGTCTCCCGCCGACATATGAGGAGCAATGCCCCGCACCACCCTTGGCAGGCAGAAGCAGCAGGGTTCCCACTCCCCACACCCCTCCCCCCATAGTAGGTGGTGGGGGGAGGCCAGTAGGAGATCTGATGGTTGACGAGGTGGCCCAGTTTGACAAGGAGAGAGAGAATGTCCGGATTCTGCCTCGACCAACACCTAAAGTTAGAGGGAGAGATCTCGACAATTTTCTAGATAATACCCGCATCAAGTTTGTTGGCTTCCAGTTGCGAAGTGATCGATCCACCATCGCCGGTCTACCACTGCCCATCCATGAAGGTCTGCGCGTTCTCAAAAAGCATATGTACACATCCTTATCCGAGATGCAGATCCGTGAAGAAGAGGAAGCGACAGAGAAACCGTTCACCAAGGGCTCGGTGACATTACCAAACAACCCAACGGAAATGCTATATCAGGCTCTACTGCCAAATCTTCCTCAGTACATGATTGCTCTGCTGAAGATACTTCTTGCGGCTGCTCCCACGGCCAAAGCCAAGACAGACTCGATTAACATCTTGGCCGATGTCCTCCCCGAAAACATGCCATCTACAGTGTTGCACTCCATGCGACTGGGTATCGACGTAAATCGTCACAAGGAGGTTATCGTGAAGGCTGTGTCGGGAATGATGTTCATTCTGTTGAAGCACTTCAAGATCAATCACGTCTATCAGTTCGAGTTCATGAGCCAACATCTTGTGTTCGCAAACTGCATCCCACTTATCCTCAAGTTCCTCAACCAGAACGTGCTTGCCTTCATCACTGCCAAAAACACGATCCCACAGTTGGACTTCCCGAGCTGTGTACTTGGGACGCCATCAGAACTCACCGCGGAGAGCCTGGAGACTGTTGATGTGGAAGGCTGCTGTTGGAGAAACATGTTCTCGTGTGTAAACCTGGTCCGTATTCTTCAGAAACTCACCAAGTGGAAACACTCGCGGACAATGATGCTGGTCGTGTTCAAGTCGGCTCCCATTCTCAAGAGAGCCCTCAAGGTCAAGCATGACTTGATGCAGTTGTATGTGCTAAAGTTACTCAAAGCACAGACCAAGTATCTCGGGCGCAACTGGCGTAAGAGTAATATGAAGACAATCTCCGCCATCTACCAGAAAGTGCGCCACAGGCTGAACGACGACTGGGCGTTCGGTAACGACCTGGATGCGAGACCCTGGGATTTCCAGGCCGAGGAGTGCTCTCTTCGCACATGTGTCGACAGATTTAACAGCCGTCGCTACGGACTGGAATCCCCGGATGTTGGTGAAGACGAGGACTACAAACCAGTCGATAACAATCCGCTGAGCGTCCTCGGCCAACGAGTGGAGCTGGGCGAAGACTTCAAGCAAAACTACGAATGCTGGTTAGAAAGGGAGGTCTTCTCTGTTGATATAGACTGGGATCAGCTATGTACGTGTACATCATGA

Transcript

rna-XM_032387175.2

CCCTTCTCCTCTGCCAAGCGAAAGGCGAGGTCACAAAGCGCTTCATtctcaaaacaaaatggacGGCGGTGATCGAAAGCAGCGCGGAATCCCTAAACTGCGCGATATTCTACGCCGCCAGCGCCGGGAATCCGAGGGTCAGATAGACACATCTCCCGATGTAGAGTTTGAGTACGATGATACGGACGAACTGTCTGCCGAGATCGCCGAGTTGTACAGTTATACTGAGGAGGCAGAATTCGCACTAAACAAGGACGCATTTGAAAACGACTTCTATCAGCATGAGTCTTGCAAGTGGATCCGCTGTGGGGAGAAGTCACGGCGTGCCTACATCCTGAGCATACTAGACCATGTGGAGTCTGTTGACCCTGATGTCAGGGTCTCTTCTGCTAGGATCTTGCTTTATTTAGCACAAGGAAACTTTGCAGAAGTGAGCACTAAAGAAGAACAAGAATACTGGACAAATCAGAATATCCTCCTTCTCTATGAGACTGAGACATTCCCTGTCATTGTGCAGATGTTACAAATGGAGATTGATGACAGTCAGGCTGCAACATCAGCCCTTCACAAGCCTTCAATATCCATGGTTGATAGCATTAATATCAGAATCTATTTGAATTTGCTTTACACAATGGTTGAGTGGATGCGTGTGCCACACAAGACTGACACACCAGAATCCAAGTCAATCAAACACTTCTTCTGCCAGGAATTAAGCCTGCCTATTGTAGGTGATGACTGCCTAGCTGTCATACTGTTTGAGATGGTTCTCAAGTTCTGTGCAGGCAGCTCTCCTCATTTCCCCATTAAGAAAGTGCTGATCATGCTATGGAAGACTATTCTTGCTTCTTTGGGTGGAATCAAGCAGATTGAAGTGCTTAAACGAGAGGCAAGAGTCCGAGCTGGTCTCCCGCCGACATATGAGGAGCAATGCCCCGCACCACCCTTGGCAGGCAGAAGCAGCAGGGTTCCCACTccccacacccctccccccatagtAGGTGGTGGGGGGAGGCCAGTAGGAGATCTGATGGTTGACGAGGTGGCCCAGTTTGACAAGGAGAGAGAGAATGTCCGGATTCTGCCTCGACCAACACCTAAAGTTagAGGGAGAGATCTCGACAATTTTCTAGATAATACCCGCATCAAGTTTGTTGGCTTCCAGTTGCGAAGTGATCGATCCACCATCGCCGGTCTACCACTGCCCATCCATGAAGGTCTGCGCGTTCTCAAAAAGCATATGTACACATCCTTATCCGAGATGCAGATCCGTGAAGAAGAGGAAGCGACAGAGAAACCGTTCACCAAGGGCTCGGTGACATTACCAAACAACCCAACGGAAATGCTATATCAGGCTCTACTGCCAAATCTTCCTCAGTACATGATTGCTCTGCTGAAGATACTTCTTGCGGCTGCTCCCACGGCCAAAGCCAAGACAGACTCGATTAACATCTTGGCCGATGTCCTCCCCGAAAACATGCCATCTACAGTGTTGCACTCCATGCGACTGGGTATCGACGTAAATCGTCACAAGGAGGTTATCGTGAAGGCTGTGTCGGGAATGATGTTCATTCTGTTGAAGCACTTCAAGATCAATCACGTCTATCAGTTCGAGTTCATGAGCCAACATCTTGTGTTCGCAAACTGCATCCCACTTATCCTCAAGTTCCTCAACCAGAACGTGCTTGCCTTCATCACTGCCAAAAACACGATCCCACAGTTGGACTTCCCGAGCTGTGTACTTGGGACGCCATCAGAACTCACCGCGGAGAGCCTGGAGACTGTTGATGTGGAAGGCTGCTGTTGGAGAAACATGTTCTCGTGTGTAAACCTGGTCCGTATTCTTCAGAAACTCACCAAGTGGAAACACTCGCGGACAATGATGCTGGTCGTGTTCAAGTCGGCTCCCATTCTCAAGAGAGCCCTCAAGGTCAAGCATGACTTGATGCAGTTGTATGTGCTAAAGTTACTCAAAGCACAGACCAAGTATCTCGGGCGCAACTGGCGTAAGAGTAATATGAAGACAATCTCCGCCATCTACCAGAAAGTGCGCCACAGGCTGAACGACGACTGGGCGTTCGGTAACGACCTGGATGCGAGACCCTGGGATTTCCAGGCCGAGGAGTGCTCTCTTCGCACATGTGTCGACAGATTTAACAGCCGTCGCTACGGACTGGAATCCCCGGATGTTGGTGAAGACGAGGACTACAAACCAGTCGATAACAATCCGCTGAGCGTCCTCGGCCAACGAGTGGAGCTGGGCGAAGACTTCAAGCAAAACTACGAATGCTGGTTAGAAAGGGAGGTCTTCTCTGTTGATATAGACTGGGATCAGCTATGTACGTGTACATCATGATGGCTAGCTTTCCTTGAGGAAGGGGGATGGGGATGTCAAGCGAAGCTTTGAGTGCCTATCAGAAAGTGGTCTCTGTTGTATAGACTTGGCCCTGATAGCGTGTACACTCTGATGGCTAGCTCCCCTTGATTGAGGGGGTAGGGATGTTACTCAAACCCAGGGAGATTTCCCTGTTGATATAGAACTGGACCTGATGAAGTCTACATCCTGATGGCTAATTCCccttaagggggggggggggggggtggggatgtTAAGCAAACCTTGGTGGTCTCTGTTGATATGGTCCTGAACCAGACAACGTGTTCATCCTACGGCTAACTTCCCTTGAGGGAGGGGATTGAAAGCAAATCTACGAATGCTTGTTGGACGGTGTGCGAATGTCAGACTGGTGCCGATTTGGTGTGAAACCTTTGGGATACTTTGTAAATGAACCCTGAATAAAATGGATTCAAATCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q803T2	Striatin-interacting protein 1 homolog OS=Danio rerio OX=7955 GN=strip1 PE=1 SV=1
Q8C079	Striatin-interacting protein 1 OS=Mus musculus OX=10090 GN=Strip1 PE=1 SV=2
Q5VSL9	Striatin-interacting protein 1 OS=Homo sapiens OX=9606 GN=STRIP1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003401 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11882 all species →	DUF3402	Domain of unknown function (DUF3402)	Family	Interproscan
PF07923 all species →	N1221	N1221-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040185 all species →	Family	Far11/STRP	Interproscan
IPR021819 all species →	Domain	Far11/STRP, C-terminal	Interproscan
IPR012486 all species →	Domain	Far11/STRP, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13239 all species →	PROTEIN REQUIRED FOR HYPHAL ANASTOMOSIS HAM-2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0007010 all species →	Biological Process	cytoskeleton organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032243066.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032243066.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

43TPM > 0

16Conditions

48.0Max TPM

16.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	17.34	23.94
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	15.29	18.90
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	16.74	17.84
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	14.16	14.68
whole 6 week old aboral regenerate · regenerate uncut	3	3	16.98	19.04
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	11.46	18.93
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	11.37	17.97
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	17.10	18.44
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	18.64	19.58
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	20.65	25.76
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	17.16	18.21
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	27.71	48.04
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	15.09	17.53
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	12.17	18.82
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	21.76	23.15
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	5.88	17.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	23.94
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	16.85
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	11.24
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	18.90
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	14.65
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	12.31
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	17.84
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	16.96
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	15.44
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	14.68
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	14.40
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	13.39
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	19.04
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	16.83
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	15.07
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	18.93
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	15.44
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	17.97
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	16.13
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	18.44
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	16.93
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	15.93
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	19.58
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	19.02
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	17.33
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	25.76
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	18.42
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	17.77
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	18.21
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	17.75
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	15.50
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	48.04
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	18.97
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	16.13
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	17.53
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	16.11
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	11.63
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	18.82
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	17.69
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	23.15
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	21.36
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	20.78
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	17.65
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.