Gene detail

Detailed information of XP_032243109.2 in Nematostella vectensis

Genomic Location: NC_064034.1:4370549...4377016
NR annotation: XP_032243109.2, MDS1 and EVI1 complex locus protein EVI1-B [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032387218.2

CGCGCGGCACCATGGGATGTGCGTCATTTATAAGCCTCCAGCCGTGACCCAGGATAGGCGagtttttctcttattttccTAGGATTTCTCCCGTTTTTTGTGAGTGAAATACCTTAAAGTGTTACACGATGACATGCTAGGGTATTTTCTTCGATTTTTGCCTTGGTTTTAGCGAAGGATCGCCGATATATCAGCGCTATTCTAAGACCGTCAGGAGGGATCAATTTTCAACATGGCGGACAATGACAACATTGTCGAGGTAGAGACAACTGCATCACCAAATACAAGTGCTGTTGCTTTATCCGatgatgatgaatttGACATTCATGTGTGTGGTCGCTGCAAAAACACCTTCAATGACCTGTCCAAGTACATTGAgcacaaaaaagcaaaaacctGTACCAAGACCAAAGAGCCGTGCATAGAGTCTACTACGGATCAAGTTGAACTTATACCTtatatgggggagggggtagagATGGTCACAATCGTACCGTTGACACCGGAGGAGGAGCCGGCTGAAGATCATGCTGATGTCAAGGAGCCGCCTCATCCAGTTAACTCAGACCCAACAGAGCAGGCCCCTGGGCTACCTGACTTGGCTGATGACAGTAGTGCCTCCAAGCCAAGGAGAAGAAAACGCAAAAACTCTACCCCGAAAACTACAAGAAAGCCTGTACGTGCTATGGAGACACCTCATGCTGAGGTCTTGATTCAACCAAAAGTCACAGGGGCTACGGGTGGCGGGGAAACTATCACTGTACACATCCCTGAGTCACAGTTGGTGCACCTCGGCGCTTCTACACCTGTGGGCGGCAAGGGTGTGCGCAAACAAGGTGCCACCAGTGTGTTTGTGCCGATCTACCTTACAAGCCCTACACGCAGCGCCTTCAAATGTAGTAAATGCCCAGCAGAGTTCCGCAGCAAGGAGGAGCGTGACGAACACTCAAACATGCACAAGAAGAACTATAAATGCGACGATTGCAACAAGAGGTACTTTTCTTATGACGCACTGGAAGCACACAAGCAGACAGAGTCGCATTCACACACGTGCGACGAGTGTGGGAAGGTGTTCCATTCGCAGATCTACCTGAAAAGGCACAAGACCGTGCACGTAGAGGAGAGGAACTTTCCTTGTGAGATTTGCAACAAGGCGTATACATCAGACGCAAACCTAAAAGCGCATAAGAGGTCCGTACACTGCATTGAGAAAAAGCACAAATGCGAGGAATGTGGAAAAGCGTTCGCTCGCAAGGATAAGCTCAAGCGCCATCAACTGATCCACATTCCTTACCCGAACCGACCAGTGTTTCCGTGCCCATTTCGTAGCCACACTGGATGTACTAGCACATTCTACCGAGAGGACAAGCTCAAAAGGCACTTATTTACCCATTCCAAGGAAAAGCCATACAAATGTCAAGAATGCGGCAAGGGTTTTGCTCGCCGCGACAATATGAATGATCACATCAAGACGCACACTAAGGAGTTTAGTCACATCTGCCCTTTGTGTGACCGAGGCTTCCTCGGTCCGGCCAAGATCAAGAAGCATTTGAAAAGTGTTCACGAGATCAAAGATGCCGCAGAGCAAGACAATCTTGTCCAGCAGGGCAAGCAGCCAACGCCAGTCATTGTGGCGCCTTCAGTGGTTGTGGCTAGTATGGCTGGGAGTAGGGAGCCTGGGGAGGTTCAACGGCCACCTGTACCACAGGGAATCATCGACGGTAAAATCGAAGATGAGCAGCTGAGTGAGGAAAGGGAGAAGAGTGGAGGTTTTGCTGAGGTTGTGAAAGAGTCACGTTCTGGGGAAGTGGAACAAGAATCCAGCCAACCTTCTCCATCAGCTAGCAATGACTCGGACGCTACCGTGGAGGACGTAAACATGGCCGAGCACATTACGCAGGCCATAACCTCCTCAATGGATGTCTCCATTCATCACGACTCTATCATGAACCAAGCCATCACCACAGCCATCAGCAGACCAGTCTCCCTGCTTAACAGGCCTTCGCTCTCCCAGGGCGTGTCTGACCTACCTACACAAGTCTCTGAACTCCCCTCTCATGTCTTTATCCCGCCCATGGTGCCTACCTCGTCACATTTGTCACACATGTCCGACTACAGCACGGGGGACATTGTGACGATGCCAAGCGAACTCGTGTCATTGGTCCGGGGCTGTGATACGTGATCACTTCGCCTAGGACGTGACATTGACATTGCAGCAATCTCGAGACTGACTTTATTGGCCAGGGGCAGCGACACGTGATCACTTCGCCTAGGACGTGACATTGACATTGCAGCAATCTCGAGACTGACTTTATTGGCCAGGGGCAGCGACACGTGATCACTTCGCCTAGGACCTGTCCTGTCCCGAAACTGACCATCGGCTTGTGACGATGATCGCTATGTGGCTGAAAAAGACGTGGCTAGCCGATCTGAAACAATAACTAAGGAATGGCTGCGCCCCTTGGCCTAAGCCTTTAGACGTCACGCATTTATTGTTGACACAGCGCTAATGGTCAACTATTGTCACGAGACGTAGAAGCTAAGGCTTTAGGTTATTTATGccgtttttagttttatatgtACATAGATACCTAGGATCTTTAGGATCGCTTTAACGGGCTTTAGGATCGCTAAAAGAGCATTCGAAATTTTGACAGCTGCCATCCGGGCGACCCTTGAATATTGACGGGCTTATTAGAGTAAACGGTAAATTGATCGGGATGTCATTCAATCGACCCCGTGCTTATCTACGTGTTACAGTTTACTCCGCTAGGTCAGCAAGACACTTGATTGAGGTTGATTTTGTGGTATTGTATTTTGTCAGTTAGAAGGAAAAAAAGCTTAACTTCTAGAATACATTTGATACATACAATACCGAATACAAGTGTTTTGGTTTCGCTGGTAGCGTGTTTATTTGAGTAGCAATCTAATTGCATAAGCAGAATATGTATAATATAGCAATATGATTCGCAATGAATTTTACTATATTTTAGATCCTTTTCACATTATTGGATAATAGAAGAAGTGTATCTGTTTACAGCATGAACACTAAGCATATATGCATATAGAATATTTACCTAATTATGAATACAATAAAGAAAGGCGTTAAACA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005475 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13912 all species →	zf-C2H2_6	C2H2-type zinc finger	Domain	Interproscan
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF12874 all species →	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR050169 all species →	Family	Krueppel C2H2-type zinc-finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23232 all species →	KRAB DOMAIN C2H2 ZINC FINGER	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for XP_032243109.2 in Nematostella vectensis.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032243109.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032243109.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

43TPM > 0

16Conditions

23.0Max TPM

13.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	15.74	19.86
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	10.62	14.56
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	13.31	14.75
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	19.57	23.05
whole 6 week old aboral regenerate · regenerate uncut	3	3	12.52	16.66
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	12.96	19.90
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	9.48	16.83
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	14.83	17.73
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	14.76	21.13
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	18.99	20.10
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	17.61	19.84
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	15.87	20.03
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	14.04	15.78
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	10.50	16.67
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	9.85	15.29
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	11.58	20.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	19.86
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	14.64
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	12.71
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	14.56
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	8.85
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	8.44
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	14.75
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	13.85
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	11.33
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	23.05
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	17.85
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	17.81
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	16.66
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	12.34
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	8.55
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	19.90
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	18.98
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	16.83
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	11.62
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	17.73
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	15.66
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	11.09
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	21.13
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	15.20
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	7.94
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	20.10
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	18.67
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	18.22
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	19.84
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	16.97
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	16.00
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	20.03
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	13.96
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	13.61
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	15.78
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	14.57
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	11.77
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	16.67
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	14.82
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	15.29
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	14.26
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	20.70
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	14.03
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.