Gene detail

Detailed information of XP_032243129.1 in Nematostella vectensis

Genomic Location: NC_064034.1:4317020...4320532
NR annotation: XP_001637156.2, uncharacterized protein LOC5517127 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032387238.2

gaaaattacccagaagtcCCTGGGGGCGAGGTTGAACACCGGTGGCCACGTCGATCTTCTAGAAAGTGGTGGCGATCAAAACAAATCGTACATTTTACCTAGCTGTGACCTGTATCGGTTATCATAAATCTTCTTTCTAACTGTTAACTCGATCCTTCACGACTGGTCTAAAGACGTAGCCCAAGTCGGTCAGTGGTGTTCAAGCCATAGGCATAAATCGGTGAACCATCTAAAGCTCACCAGgtttttcctaGAATGGGTAATGTTGACTCCTCTCAATTGGCTCCAATCCCACTGGGGTTTGAATACATGTGTCTGGTCTTGCACAAACCTGATGGGATACGCATCATTCATGGTAGTGAACAAAACATTGCTATTATCAAAGAGGTGTTATTGAGTACATGGGAAGCTGGCTTAGATGATAAGGATGCAAAGATGAAGTGCCATGGCTATGTGCAGTCCTTCAAACTTACCGGATTCCCATTTGACAAAGGGAGCTCTCAAGTGGAGGCTGTCAATGCAAGAAAACTCGTGTCTAAGTTGCTTTGGAAGCTAAACAATGTTGGTTGGAAACTTGTTATGACTACCGACCTGTCCAGAAAGCTAGGATTAGGTACTTTCTTTTTTGTGAAAGAGGAAACTGAGGCAGTGACATACACATTTCCTTGTATAAACCTAAGTAGCTCAGACAAAATCCAGTTTGTCAACTTCTCTCAGCGGTTGTACCCACAATTTCTGTCTGTCATCGAATCCACTTGGACTCAAGGAATACAGATGATTGAGTCTGAGGAAGAAAATTTGTATGAAGTGAAAATGCATGGAGACCCATGGAAAGGTTTTGGACAAGAATCCATTGAATCAAGGTCCATGATTCAGAAGCTTATTGAGCTTTGTGCTAAGAATCAACTTTCATTCCACTGTGCAGCTAACATAAAGAACACAGCAGACAGTCTGTTCTTTTACCATGAACCAAAGCTCACAGAAGGGGTGATTCCTTCAATGTTTTCTATCAGTCTAAATGGTACAGATGGGGTCAGGCTTATAAACTATCCTGCAAATATGCAGTCTGTGGTTCAGCAGGTATTAGTAGATAACTGGGCCTGGAGAGGTGGTGTTGCAAGTGAGAGGGAGTTTTATGGAGGCTATGAATACAAGCTCAATGGAAATCCATGGTGGTCAGAAGAAAAGGAGTCTATCATGGCAAGGTATCTTATCTTAAAGCTCCTCGAGGCCCTGCAAGGCTATGGCTGGCATGTGATAGGGGGATTTGACGTCTCTCGTCGCCTGACCACCAAAAGCACATTAATATTTCAACAGTCAGCACCAATGAAAACACCTCTTTTATGCATCAGTGCAAGTGGATCTGACAAGTTGAGGTTCATCAACACCCCAGATGCAGAACTCAGCATAATGCGTGAGATTATGCATAAGCACTGGCCCAAGAAAATAAGTGCAGAGAAGAGGAAAGATACAGCACTTGGTGTCTCCTGTGTACAGTTCAAGATGAATGGAACTCCTTGGCATGGGGAGGATGATGATAAGTACTATGCACGTAGCATGATGTGCTTTCTGTTACAAGCATTGTCAAAGAGAAGCTGGAAACCGGTTCTGTCTGCTGATGTATCTGCTCAGTacgataaagatgatgatgatgaaaagtATCCAAAAGATGTCCATAGCTGGTGGTTTATGAAGGTTGAGTCCCCTGATGAGCTTTGGGGTGGGTCAACCCAGTATGGCTTTCTTATGCACTGAATAATCAAGTTTAAACAGTGTGATACAGTTTGACTGACTTACCCAAGTTCAAACCGAAAGAACTATTAATTTAACTTTGTAAGTAATGTTAGGTGTGTTGATAGTTAACTAACAGCATTTGAGGTTACATagactagtgaataagggcaaaaatcaaaatctgtATACCAATCCACTTAGACTTTGCTCTGTTGCTTCACCACCCTCAAGTAACTCTGAGAGAAAAATCTGGAGTAAATCTATCATTTCCATATTTTAGCTTGATGATTCTCCAAGTAAGGATATACTCTAGTGTTTGTGAGGAACGTTTGTTCCCCCTTTTATCACATCAGGGAAAGTTCATTCATTATTCCGAGGGGGGGGAGGCGTTagaattttgataaaagtaacGTCTAAAATTAATTGCCCCCCTCCAGGGGaaacaaaattttccatgcACCCCTTACGATTCCCCCATATTTTCGGTGAATCAGATGCACGCTTATAGCATTAAAACGTTTTGTTATAACTTAAACATGGAACATAAGCAatttataaatataatttAGCAGAAACCATGAAAATATGTATATAGGGTGTATACAGTTTTGTATTGCATAGATAAAACGTATCCTGACTctggattgtgcatgccaaataactTCCCCCAAACCGAGAATCGTTGAACCAAGACTTTGTATTTGACACTTGGTCAAATTGTATAGAAGAGAAAGCACCCTAAGGAATGAGttccccccattttgaaatccatACATTTTCGATggccttcccccccccccccccacccaccttTAGACCTTGGAAATTCTAgatctaccccccccccctccccatggTATCCTTACGCCTCACCACCCcccacacccacacacaccccccccccccccccccccccccatttcgggataaatgaactttccctaagTAGACAGGGTTTCGAAAAGGAAGCAGTAACAAACCATTTGAAGCTAGGTAATGGGAAAGGGATTTATGGTACAGCGTTATGTTTTATAGTAGTGGAGCTGGTTTCTTTGGTGATATGTTATTATTTAAGAGGCGTTTTATCATTTTCTCAATGTCTTTCTATACAAGAGTGGGGATTTAATGGCTTTTTAATGTGGAAGATTATAATATTCGCGGAAACAAAGCTTTCGGTGCGGTGACGGTACAACGAAAGAATGAATTCTTACAGGTAGCACAAGCTCGTTATTTGTCCCTATTGattttacggtaaacatagggcgaaaaagaaaataagtgaaaaataaaaaaaaaaatctgtgtttatgttta

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001059 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for XP_032243129.1 in Nematostella vectensis.

InterPro

No InterPro signature was recorded for XP_032243129.1 in Nematostella vectensis.

PANTHER

PANTHER term	Description	Source
PTHR38696 all species →	-	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for XP_032243129.1 in Nematostella vectensis.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032243129.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032243129.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

42TPM > 0

16Conditions

16.2Max TPM

7.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	7.72	10.73
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	7.40	9.49
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	7.76	8.91
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	12.03	13.72
whole 6 week old aboral regenerate · regenerate uncut	3	3	7.42	8.48
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	8.95	15.54
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	11.14	16.16
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	6.84	9.57
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	3.89	6.71
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	7.08	8.04
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	6.64	7.00
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	6.30	10.54
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	8.82	11.29
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	4.46	8.41
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	6.03	10.17
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	7.73	15.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	10.73
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	6.33
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	6.09
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	9.49
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.76
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	5.94
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	8.91
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	8.16
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	6.21
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	13.72
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	12.74
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	9.64
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	8.48
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	8.21
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.55
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	15.54
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	11.31
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	16.16
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	8.88
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	8.39
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	9.57
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	6.14
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.80
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	6.71
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	4.97
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	8.04
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	6.68
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	6.51
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	7.00
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	6.68
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	6.22
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	10.54
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	8.36
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	11.29
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	8.16
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	7.01
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	8.41
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	4.97
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	10.17
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	7.93
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	15.56
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	7.61
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.