Gene detail

Detailed information of XP_032243131.2 in Nematostella vectensis

Genomic Location: NC_064034.1:4533399...4540117
NR annotation: XP_032243131.2, spindle assembly abnormal protein 6 homolog [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032387240.2

ACTAGGTTGCCGCTGATAAAGTTCACCGGAGGCTCAGTATTCGTGAAGCGGCGCCAAAACTTGAAACTAAGTCGTTCCGTTTGAAGTAACCATGGATGAATACTTCAATAAAGCGGTTCCTCTCTACGTAAAGCACACAGATCGGGAAGACAGGAGATCGCATGTTCGTATCACTGTGTCGAGTCGACTGTCTTCGTCGTCTCCGCAGAAGGAGCTGGCAGTCCGACTAACAGATGATGGCGACCCATTCTTCTTATACACACTAGTACTTAATGAGGAAGATTTCCAGAGTTTGAAAAGTCAGCAAGGATTGTTGGTGGATTTTGGAGCCTTTCCCCAGAAGTTTGTAGGTCTGCTTGAGATGTGCTTGAGTGAAGAGCAAAAGGAGGTCCCAAAGTTTCTTCTTCAGTTTCTGACCTCATCTGGTGCACTTGATAGAGGGCTTGGCTGCTTGAACATCATTGAGACAAATACATTCAAACATCTCACACATCTCTCCCTCAAGTTTCTACCTGGTAATGATACTGAGGTCAAGAAATATCTGGCTGACTGCCTGGCCAAGTTAAAGacTGAGAAGAACTCGCTTGAGCAGCGATTATCATGTATTGAACAAGACCTGAAACAAAGATTAGCCACTTGTGAGAAGGCATACAATGATAAATCAGAGCAACTGAGCCGCCTTCAGGTGGAATTTGATGCCAAATCTACTGAGTTGGCCAACAAACATGCGCAAGAGATGACTGCAGAAAAAGAGCGAATTCTACATCAAAAGAGTAAAACTCAGCAACAGTACGAGAAAGAGAGAAGGGATCTAGAACAGGCTCATAGGCacacaGTAAAGCAACTTGAGAGCAGACTTGATAAAGTGGAAAATCAAAACAAGGAGTTCACAGGAGAAAAATACAGAGCAGAAGCTACCATCCGCGAACTGAAAGGAAAGTTATCAGGAATTGAAGAGGAATATGGGCATATGAAGCAAGAGCTAAAAACACTTAGACGAGATAATGGGACATTGGACTCAGAGCGCCATGAGAGGGATAAAACATTGGGACACCTAAGAACAAGAATAGCAGTGCTGGAACAAGAATTGCGGGACAAGGAGCAGGTCATCAGCCGGTCCAATGAGCTGTTGGAGTCTTCCAATGATCAGAAAAAGAAACAGGAAGACACTCTGAATCATCGAATCCAAGAGATTAAGAAACTTGAGAACACTGTCAGCACTATCTCTGCCGAAGTTGTCAAGGGAAATGAAATTATACATAAACTGCAGACGCAGTTACGAAATTTTAAATCAGAGATAAAACTGAAAAACGTCCTCACTAAGCAACAAGAAAAGTTATTGGGTGAAAAGgaAACTGTCATAAAGCGGCAAACCCAGGAACTTGAGACGACGACAGAAAacctaaaacaaaaagaggaGGAGGTGAAAAAACTGAATGAATCACTTGAAAGCACCATGGCAAAACTAGAAGAAAGCAAAGAACTGTTGAAAACCAACGAGAACGTGATTAATTGGTTGAACAAGCAGATGAACGACCAGATGGCAGCTCGGCAACGACACGGACCATTCGAACTTCACTCCGCCAAGGATCCCGCGTTTGCTCGCGAATTAACCGCTTCTAGTGTGCCATCAACGACTTCCGGTTCCCAGACGTTTGTCCCGCGCTACACTGGGCCACAACAGGTGTCCTACCGACCTCCACCCCAGCGGAAGCCTAGCCTCCCTCGACCCCTCAGCCAGTCTACCCCGACCATCCCTGAGGAACCCGAGACTGCTCCACCAAAGCCTAACACAACGACGCCCCTGACACGAGGGAATCGCGAAAACCAGCCCCTGCTCGATCCCAAGTACCTACAGCGGAAGACACAAATAGGAGGGGGTCCCCTTAACGACGCTAATAATGTCCCTAGTGAGAATAGGGTTCTGCAGCCATCACAACGATTCGGGCCTAACCCTCGGTTAACGCCCTCACAGGCGCCATTAATGTCTGCGTACTTCAAGCCTACGTGACCCGTGTATAGTTTCTGTGGTGATTTATACGGATTTATGTATTACGAAGTCTTGTTATAAGGTCATTCTGTAAATACtattcaaataaaataatagcCTGAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6UVJ0	Spindle assembly abnormal protein 6 homolog OS=Homo sapiens OX=9606 GN=SASS6 PE=1 SV=1
Q80UK7	Spindle assembly abnormal protein 6 homolog OS=Mus musculus OX=10090 GN=Sass6 PE=2 SV=2
Q5ZMV2	Spindle assembly abnormal protein 6 homolog OS=Gallus gallus OX=9031 GN=SASS6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004456 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18594 all species →	Sas6_CC	Sas6/XLF/XRCC4 coiled-coil domain	Coiled-coil	Interproscan
PF16531 all species →	SAS-6_N	Centriolar protein SAS N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038558 all species →	Homologous_superfamily	SAS-6, N-terminal domain superfamily	Interproscan
IPR041513 all species →	Domain	SAS-6 coiled-coil domain	Interproscan
IPR032396 all species →	Domain	Spindle assembly abnormal protein 6, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44281 all species →	SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0007099 all species →	Biological Process	centriole replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16487	SAS-6, SASS6; spindle assembly abnormal protein 6	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032243131.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

35TPM > 0

16Conditions

14.5Max TPM

3.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	2	7.32	14.47
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	4.59	6.10
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	2.83	3.38
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	2.48	2.85
whole 6 week old aboral regenerate · regenerate uncut	3	3	2.37	2.96
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	0.85	2.56
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	4.43	7.71
whole 6 week old aboral regenerate · regenerate 36hpa	3	2	3.41	5.27
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	1.95	2.95
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	1.45	2.20
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	2.44	2.74
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	4.61	7.28
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	9.17	13.35
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	2.21	6.63
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	1.54	2.66
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.92	2.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	14.47
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	7.50
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.10
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.95
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.73
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.38
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.77
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.36
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.85
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.70
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.87
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.96
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.24
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.92
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	2.56
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	7.71
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	5.59
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	5.27
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.97
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.00
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.95
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.91
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.20
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.14
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.74
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.34
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.24
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	7.28
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	6.55
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	13.35
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	7.35
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	6.81
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	6.63
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	2.66
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	1.97
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	2.77
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.