Gene detail

Detailed information of XP_032243149.2 in Nematostella vectensis

Genomic Location: NC_064034.1:4484493...4491694
NR annotation: XP_032243149.2, histone-arginine methyltransferase CARMER [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032387258.2

AAAGCAATTCCGTGTCAAAGTCTAAGACACGTGGTTGTTCTAAATATTTTTGCGTCCGGTTCGCACAACATTGTACGCTTTTCTTACAAAAACATGGACCATCCGATGAAATCAGGAACCGATGTCAGATCTCAATGCTTTGCCGAGTGCTCCCTACAAGTTTTAAAAGGAGAAAGCAGTCTGAACACGGAAAATAAGGGAGAATGCCGGCTTGAAGTTGTAGTAGACAATCCCAACTCAACTTGCACAGTTCACATTCAAACCGGAGTGGAGTTCTCCGTTAGCTTGAATGTTTCGATAGATACCAGTCATTCCCAGGTCGGCCGGCTACGCTACCTTCTAGATGTACCTGAACATTGTTTTAGTTTATTGCTGACATTTCCAAGACAAGAAGAAATGCTAGAGTTTAAAAAGTTATTACAAAATGCTTCTGGAGAGTCAAAGTCGGTGTCTCAATTTAACGAGAGAACAGAGGAAGCATCTGCGGCCCAGTACTTCCAGTTTTATGGATACCTCTCACAGCAACAAAACATGATGCAGGACTCTATCAGAACATCAACATATCAAAGAGCAATGCTTCAGAATGTTGCTGATTTCCAGGATAAGGTGGTAATTGATGTTGGTGCTGGGTCTGGTATCTTGTCGTTCTTCGCTATCCAGGCAGGAGCAAGGAAGGTTTACGCCATCGAAGCAAGCTCAATGGCTGCCCATGCTGAGATGCTAGTTAAGAAGAATAACCTCCAAGACCAGATTATTGTCATTCCTGGAAAAGTTGAAGAGGTCAATGTCCCAGAGCAAGTCGACATGATCATATCTGAACCTATGGGTTACATGTTGTACAATGAACGCATGCTTGAGAGCTATGTTCATGCTAAGAAGTGGCTCAAACCAGGAGGTAAAATGTTTCCGACACAAGGCGATCTTCACATTGCACCATTTTTCGATGATGCTCTTTACCTTGAGCATTTCTCAAAGGCAAATTTTTGGTACCAAAACTCATTCTATGGGGTGGACCTTTCTACACTTCGACAGGCAGCACTCAAAGAGTACTTCAAGCAGCCAGTTGTTGACACTTTTGATGTGAGGATCTTGATGGCCAAGCCCGTGACTCACTCTGTGGACTTCCTAGAGATAGAAGAACAAGATTTACACAGAATGGAGATCCCATTGCAGTTCACCATTCTGACCAGTGGTTCTCTGCATGGTCTGGCCTTCTGGTTTGATGTGTGCTTTAGAGGCAGCCAGGCCCCTGTTTGGTTATCAACAGCACCACATGAGCCACTAACTCACTGGTACCAGgtCCGCTGCCTGTTTCAAACTCCAATATTTGTGAAAGCAGGACAAAGTGTTTCAGGCAGATGTGTACTCAACTCAAATGCAAGGCAAAGCTACGATGTTGAGTTTGAACTTGGTATTGATGGTACCACAGTGAGGTCCAGGAACACAGTAGACTTAAAGAACCCCTATTTTCGTTACACTGGTGGTGTCCCATCAGTGCCTGCGGGCTGCAACAACTCGTCACCAACAGAGCTGTACTGGTCCATGACTAATGGGGAAAGCATGGGCGGAGGAGAAGCCCTCATGTCCACTGGTGGCCAAGGGCCCATCGTGAATGCTGGAGGAATACCAGCAGCATCTGTGTACAATAATAGTTATGGAGGAGGACTATGGACAGCAGGTGGCTACACTCAGCCCAATCCTACTGCCCAGAACAACACATTTAGTGCCGCTGCTGGTTACGTCAACAGCAGTTATATCGCCAGCAGTCAACCTGCTCTCACATTTGGCCACACCACCCTGAGAAATAGCACACAGTATTCACAAGTGTACTCCAGGTAGCTGAATCGTTCAAAACACTGTGCTTATGTTTTTGAACCTCCCATGATACAAGCACAACTGGACCTGAATAGGTCTATGTATCCCAGCCAAACCATTGCTTCCATAACAAAAATAAGGGGTGCGATTTATTTTATAACCACTGTATGCACAAGACACAAGTGTGCTTCTgaaaggtgttttttttttgcaataacaaaaataaccaGATAGTAATGTGCATTTAGGCACAACAATTGTAAATACGAATGATTGTAGTCTAAGGCTACTTCTTATACTAGAGATGTTTCTCACTTGTAATCCAGGGAAAACATCGAAAATTTGGTGTTCCCTTTGATATATTTATTGCTTTTTTGCAAAAGCATTTTGGTCAGCCAGTATAAATAGTGATATTTTTCAATGGTTTATATCAGTAAAGTGGTGTTAGAGCTatctgttttattattttgtagtACTGCTTAAATGGTATATCTTCCATTTTATGTATTATTGGCTTTTTTGCATAAGTATGTAGGAGCAAGGTATTCTTTTCATCTTTAAGTTGATAGTCTCACAAAATATTGTACATTTGCTgctttttttgtgaaaataaAATCTACTGGCCTTTTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WVG6	Histone-arginine methyltransferase CARM1 OS=Mus musculus OX=10090 GN=Carm1 PE=1 SV=2
Q86X55	Histone-arginine methyltransferase CARM1 OS=Homo sapiens OX=9606 GN=CARM1 PE=1 SV=3
Q4AE70	Histone-arginine methyltransferase CARM1 OS=Rattus norvegicus OX=10116 GN=Carm1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004745 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06325 all species →	PrmA	Ribosomal protein L11 methyltransferase (PrmA)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025799 all species →	Family	Protein arginine N-methyltransferase	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11006 all species →	PROTEIN ARGININE N-METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016274 all species →	Molecular Function	protein-arginine N-methyltransferase activity	Interproscan
GO:0018216 all species →	Biological Process	peptidyl-arginine methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05931	CARM1, PRMT4; type I protein arginine methyltransferase	EC:2.1.1.319	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032243149.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

43TPM > 0

16Conditions

37.9Max TPM

18.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	15.60	17.85
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	9.44	13.30
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	7.98	9.98
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	21.76	26.95
whole 6 week old aboral regenerate · regenerate uncut	3	3	7.61	9.32
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	27.27	32.45
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	8.68	13.39
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	28.56	31.19
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	35.55	37.89
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	32.87	34.04
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	28.93	32.83
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	12.32	18.97
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	16.09	19.68
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	12.87	27.78
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	9.38	15.79
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	14.39	25.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	17.85
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	15.07
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	13.89
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	13.30
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	8.01
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	7.02
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	9.98
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	6.99
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	6.97
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	26.95
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	22.47
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	15.84
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	9.32
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.65
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.86
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	32.45
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	28.32
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	21.05
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	13.39
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	12.66
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	31.19
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	30.95
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	23.53
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	37.89
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	34.79
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	33.96
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	34.04
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	33.21
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	31.36
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	32.83
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	28.64
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	25.33
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	18.97
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	17.98
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	19.68
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	18.06
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.54
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	27.78
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	10.82
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	15.79
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	12.35
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	25.54
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	17.62
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.