Detailed information of XP_032243181.2 in Nematostella vectensis

Genomic Location: NC_064042.1:3370961...3376660
NR annotation: XP_032243181.2, von Willebrand factor A domain-containing protein 5A [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q99KC8von Willebrand factor A domain-containing protein 5A OS=Mus musculus OX=10090 GN=Vwa5a PE=1 SV=2
Q75WE7von Willebrand factor A domain-containing protein 5A OS=Rattus norvegicus OX=10116 GN=Vwa5a PE=2 SV=1
O00534von Willebrand factor A domain-containing protein 5A OS=Homo sapiens OX=9606 GN=VWA5A PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001087 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08487
all species →
VITVault protein inter-alpha-trypsin domainFamilyInterproscan
PF13768
all species →
VWA_3von Willebrand factor type A domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013694
all species →
DomainVIT domainInterproscan
IPR036465
all species →
Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR002035
all species →
Domainvon Willebrand factor, type AInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45737
all species →
VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5AInterproscan

 Gene Ontology
No Gene Ontology signature was detected for XP_032243181.2. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K24510VWA5; von Willebrand factor A domain-containing protein 5-Domain-containing proteins not elsewhere classifiedko04990deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032243181.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples
43TPM > 0
16Conditions
21.8Max TPM
10.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole 6 week old aboral regenerate · regenerate 96hpa 3 3 12.89 14.69
whole 6 week old aboral regenerate · regenerate 144hpa 3 3 9.02 11.79
whole 6 week old aboral regenerate · regenerate 0hpa 3 3 14.18 19.76
whole 6 week old aboral regenerate · regenerate 2hpa 3 3 15.87 19.44
whole 6 week old aboral regenerate · regenerate uncut 3 3 10.74 11.28
whole 6 week old aboral regenerate · regenerate 4hpa 3 2 9.82 15.08
whole 6 week old aboral regenerate · regenerate 120hpa 3 2 7.42 12.42
whole 6 week old aboral regenerate · regenerate 36hpa 3 3 10.37 13.08
whole 6 week old aboral regenerate · regenerate 24hpa 3 3 9.39 12.50
whole 6 week old aboral regenerate · regenerate 20hpa 3 3 10.93 12.08
whole 6 week old aboral regenerate · regenerate 16hpa 3 3 10.61 11.90
whole 6 week old aboral regenerate · regenerate 72hpa 3 3 15.19 21.82
whole 6 week old aboral regenerate · regenerate 60hpa 3 3 11.01 13.21
whole 6 week old aboral regenerate · regenerate 48hpa 3 2 5.80 11.42
whole 6 week old aboral regenerate · regenerate 8hpa 3 2 7.93 13.19
whole 6 week old aboral regenerate · regenerate 12hpa 3 2 7.42 11.86

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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