Gene detail

Detailed information of XP_032243308.1 in Nematostella vectensis

Genomic Location: NC_064034.1:11407695...11433370
NR annotation: XP_032243308.1, dynein regulatory complex protein 11 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5517464

ATGTCTCACAGCTACTACAACAAGCAATGGGGAGAGACGCAAGGCGCGATCCTCGATCTCCTAGAAGTGGAGTTACCAGCAGAGCCTATGAAACCAGAAAAGGATCGGATTGCTGCATTCCAAATGTTTGCCGTGATGTATATCAAATATATTCAAATTTTCCGAAGAATAGAGGAATGTTATGATCAGGTAGTGCACCCACAAAAAAGAAGAGTTCTACGGCACTTGTTAGATGGCATCATGGGAAGAATTCTTGAATTAAAGAATGAGATGGTACAGCTTGAGTTTTCGGAATTTCATTACTTTGACGATGTCCTATCAGATCTTAAACTGACACCTGATGACATCGAAATTCCTATTCCAAAGTATTTCATCTATGAGAACTCCAAGGAGTTACAGGAACGCGAAAAACTCCTGGGCGGGATACTGGCCAAGATGGGACCACAAGACACACCCACACAAAGGGAAGAGATTCAAATGACGGTTGATGATGCTATCAGATTAATTCAGGTCCACGAAAGAGCAAGGCAGGGTAGACTGAGGGCAAAATTCATGAGAGAAATTAGGCAACAAGAAGAAAGAGAGAGACAAGCTCAACTGCGTGGCGCACCAACAATGGACCCTGATATTGCAGCTACTAAAATACAGAAGGTCTGGAAAGGATTTGCTCAGAGAAAAAGGACTCAAAGGTTGAGAGAGGAAGAGCTTATATTTGTTGGAATGTCAGCTGAACCAGAGCAGGACAAGAAAGACACTCCAATGTTTGCTGCTGATAAAACAGAGACTCACAGACATGTTATACAAGAAGAACATGAAAGGGAATACCAACAGGCTTTGGTCTCAATAAAAGAAAAGATTCGAGAGATTGAAGGTCCAGACATGAAGGAAAACATGCAAGACCAGATCCGACAATGGTTTATAGAATGCAGGGACAAGAGTGGTAAATTTCCCGACTACCCTGATGATGACGAAGGCGGATCAGCGGCTATCTTTAAAGAGAAAGATCCTGCAGAACTTGAGAAAGAGGAGGCTGAGAAAGGTGAAGATGGTGGCAAGAAAGGGAAAAAAGGAAAGAAAGGAAAGAAAGATAAAAAGGATAAAAAAGACAAGAAAGGCAAAAAAGGGAAAAAGGGCAAAGGTGGAGATGAAGAAGAGGAGCCTGGGATTAAGATGGCGGAATCCAGTTTTGTACCAACAGTGAACGAAGCAGCGGCAACATACAAAGATGTCTGGCAGTTTAGAGATGAAACTGGAAACTTTGAGCAAAAACATGACGCTGAGTTGATCAAAGAAGCAAAAAGGATTGAAGTGGAAGAGGAAATCCGCAAGCAAGTAGATGAGCTGATGAGACAAGAGTTGAAAAATCTTAAGATGGCGGTTGATAGAGATAAGGCTGGAAAAAAGGGAAAGAAAGGCAAGAAAAGCGGAAAGAAAAGTGGAAAAAAGAAAAAGAAGAAGAGCGGTAAGAAAAGCGGTAAGAAAGGAAAGAAGAAGAAGAAAGAAAAGGATTTGACAGCTGACAGGACAATCGAATCCATATACGAGGAATTAGTCCACGAGGGAATCATAGTGCGCCCACCCAAAATCCACTTGCGAGACTTTGTCGGTGAATATAGCTACCTTGGGACCACACTAAGACAGGCAAACATCGAACCCATGCCGTCACTATCAGACGTACGACGTGTTATAACCGAGTTCTCGATCCTACCTTTGGGCTCTCAGGCTGTTCATGAGAGATCTCCGATGATCAAGTCAGTCCTGATCACAGGGCCACGTGGTGTTGGTAAGAAGATGCTCGTACACTGCATCTGTACTGAGACAGGAGCTAACCTTTTCGACCTGACCGCGGCAAACATCGCCGGCAAGTACCCCGGCAAGGCAGGACTGGCCATGCTACTGCACATGGTCTTCAAGGTCGCTCGTCAACTGCAGCCGTCGGTTGTGTTCATCGGAGACGCTGAGAGGACCTTCGTGAAGAAAGTTCCCAAGACTGATAAGTCGGACCCAAAACGACTGAAGAAAGATCTGCCAAAGCTCCTGAAGACTTTAAAGCCTGAAGACCGTGTGATTATCATCGGCACATCAAGGCAGCCTTTTGATGCGGAAGTGAAGCCCCTCTGTTCATCTTACCAGAAGATCCTACTTGTGCCAAGGCCGGATTATGCATCCAGATACCTGTTATGGCGAACACTGATCCTGAAGTACGGCGGACGCGTGTCGGAATCCATGGACCTGAGCTCTCTTGCCAAAATAACTGACGGATACACCCAGGGACATATGGTACAAGCCATACAGCAGATCCTGTCCGAGAGAAGAATCCAGCAGCTCTCCAAGCGTCCTCTGACTGCTGCCGAGTTCGTGGCTCCTTTGGCGAGAATTGACCCGATCTACAAGGAGGAGGAAGAGGCCTTCAAGACGTGGTTTTCCAAGACTCCCCTGGGCAAGAAGCGAGCAAAGGCTGCTGCAGGCGATGACGAGGGAGGAGACAAAAAGGGAAAGAAAGGAAAGAAGGGAAAGAAAAGCGGGAAGAAAAAGAAGAAATAA

Transcript

rna-XM_032387417.2

GGCTCTGGGAATGAGATTGGTTTCCTTAGTAACAGATTCAAGATGGCTCCGTGGACAGCAACAAGAATACGTCCGACAAAATACTACGGCTTGTAAATATAAAAGATAACCAGGATTTTGATCAAAACAAGTTTGATACAGCTTTTAGTATAACCATGTCTCACAGCTACTACAACAAGCAATGGGGAGAGACGCAAGGCGCGATCCTCGATCTCCTAGAAGTGGAGTTACCAGCAGAGCCTATGAAACCAGAAAAGgaTCGGATTGCTGCATTCCAAATGTTTGCCGTGATGTATATCAAATATATTCAAATTTTCCGAAGAATAGAGGAATGTTATGATCAGGTAGTGCACCCACAAAAAAGAAGAGTTCTACGGCACTTGTTAGATGGCATCATGGGAAGAATTCTTGAATTAAAGAATGAGATGGTACAGCTTGAGTTTTCGGAATTTCATTACTTTGACGATGTCCTATCAGATCTTAAACTGACACCTGATGACATCGAAATTCCTATTCCAAAGTATTTCATCTATGAGAACTCCAAGGAGTTACAGGAACGCGAAAAACTCCTGGGCGGGATACTGGCCAAGATGGGACCACAAGACACACCCACACAAAGGGAAGAGATTCAAATGACGGTTGATGATGCTATCAGATTAATTCAGGTCCACGAAAGAGCAAGGCAGGGTAGACTGAGGGCAAAATTCATGAGAGAAATTAGGCAACAAGAAGAAAGAGAGAGACAAGCTCAACTGCGTGGCGCACCAACAATGGACCCTGATATTGCAGCTACTAAAATACAGAAGGTCTGGAAAGGATTTGCTCAGAGAAAAAGGACTCAAAGGTTGAGAGAGGAAGAGCTTATATTTGTTGGAATGTCAGCTGAACCAGAGCAGGACAAGAAAGACACTCCAATGTTTGCTGCTGATAAAACAGAGACTCACAGACATGTTATACAAGAAGAACATGAAAGGGAATACCAACAGGCTTTGGTctcaataaaagaaaagattCGAGAGATTGAAGGTCCAGACATGAAGGAAAACATGCAAGACCAGATCCGACAATGGTTTATAGAATGCAGGGACAAGAGTGGTAAATTTCCCGACTACCCTGATGATGACGAAGGCGGATCAGCGGCTATCTTTAAAGAGAAAGATCCTGCAGAACTTGAGAAAGAGGAGGCTGAGAAAGGTGAAGATGGTGGCAAGAAAgggaaaaaaggaaagaaaggaaagaaagataaaaaggataaaaaagacaagaaaggcaaaaaagggaaaaagggCAAAGGTGGAGATGAAGAAGAGGAGCCTGGGATTAAGATGGCGGAATCCAGTTTTGTACCAACAGTGAACGAAGCAGCGGCAACATACAAAGATGTCTGGCAGTTTAGAGATGAAACTGGAAACTTTGAGCAAAAACATGACGCTGAGTTGATCAAAGAAGCAAAAAGGATTGAAGTGGAAGAGGAAATCCGCAAGCAAGTAGATGAGCTGATGAGACAAGAGTTGAAAAATCTTAAGATGGCGGTTGATAGAGATAAGGCTGGAAAAAAGGGAAAGAAAGGCAAGAAAAGCGGAAAGAAAAGTGGAAAAAAGaaaaagaagaagagcgGTAAGAAAAGCGGTAAGAaaggaaagaagaagaagaaagaaaaggaTTTGACAGCTGACAGGACAATCGAATCCATATACGAGGAATTAGTCCACGAGGGAATCATAGTGCGCCCACCCAAAATCCACTTGCGAGACTTTGTCGGTGAATATAGCTACCTTGGGACCACACTAAGACAGGCAAACATCGAACCCATGCCGTCACTATCAGACGTACGACGTGTTATAACCGAGTTCTCGATCCTACCTTTGGGCTCTCAGGCTGTTCATGAGAGATCTCCGATGATCAAGTCAGTCCTGATCACAGGGCCACGTGGTGTTGGTAAGAAGATGCTCGTACACTGCATCTGTACTGAGACAGGAGCTAACCTTTTCGACCTGACCGCGGCAAACATCGCCGGCAAGTACCCCGGCAAGGCAGGACTGGCCATGCTACTGCACATGGTCTTCAAGGTCGCTCGTCAACTGCAGCCGTCGGTTGTGTTCATCGGAGACGCTGAGAGGACCTTCGTGAAGAAAGTTCCCAAGACTGATAAGTCGGACCCAAAACGACTGAAGAAAGATCTGCCAAAGCTCCTGAAGACTTTAAAGCCTGAAGACCGTGTGATTATCATCGGCACATCAAGGCAGCCTTTTGATGCGGAAGTGAAGCCCCTCTGTTCATCTTACCAGAAGATCCTACTTGTGCCAAGGCCGGATTATGCATCCAGATACCTGTTATGGCGAACACTGATCCTGAAGTACGGCGGACGCGTGTCGGAATCCATGGACCTGAGCTCTCTTGCCAAAATAACTGACGGATACACCCAGGGACATATGGTACAAGCCATACAGCAGATCCTGTCCGAGAGAAGAATCCAGCAGCTCTCCAAGCGTCCTCTGACTGCTGCCGAGTTCGTGGCTCCTTTGGCGAGAATTGACCCGATCTacaaggaggaggaagaggcCTTCAAGACGTGGTTTTCCAAGACTCCCCTGGGCAAGAAGCGAGCAAAGGCTGCTGCAGGCGATGACGAGGGAGGAGACAAAAAGGGAAAGAAAGGAAAGAAGGGAAAGAAAAGcgggaagaaaaagaagaaataataGATCTTTCTTCTGAGTATTTGAGAAGTGTGTGTAGACTTATttgtaaatatgtttttattccattaataaaacctttcaGAGAGGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86XH1	Dynein regulatory complex protein 11 OS=Homo sapiens OX=9606 GN=IQCA1 PE=1 SV=1
Q9CUL5	Dynein regulatory complex protein 11 OS=Mus musculus OX=10090 GN=Iqca1 PE=2 SV=2
A6H690	IQ and AAA domain-containing protein 1-like OS=Mus musculus OX=10090 GN=Iqca1l PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005135 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR052267 all species →	Family	Nexin-Dynein Regulatory Complex Component	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14690 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24837	IQCA, DRC11; dynein regulatory complex subunit 11	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032243308.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

40TPM > 0

16Conditions

25.7Max TPM

9.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	10.51	13.48
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	10.03	11.68
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	8.81	12.12
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	14.59	17.11
whole 6 week old aboral regenerate · regenerate uncut	3	3	13.69	19.35
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	14.18	25.72
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	7.81	12.97
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	7.54	9.35
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	7.99	12.78
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	9.08	17.38
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	9.50	12.69
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	6.35	9.86
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	9.61	10.15
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	4.79	9.04
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	9.39	15.24
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	7.79	11.82

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	13.48
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	11.48
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	6.58
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	11.68
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	9.55
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	8.86
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	12.12
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.94
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	6.38
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	17.11
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	16.37
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	10.29
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	19.35
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	12.24
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	9.46
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	25.72
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	16.82
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	12.97
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	10.45
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	9.35
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	7.01
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	6.27
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	12.78
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	11.18
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	17.38
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	9.88
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	12.69
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.63
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	7.18
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	9.86
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	9.20
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.15
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	9.38
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	9.28
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	9.04
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	5.32
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	15.24
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	12.93
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	11.82
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	11.55
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.