Gene detail

Detailed information of XP_032243330.2 in Nematostella vectensis

Genomic Location: NC_064034.1:12042815...12046958
NR annotation: XP_032243330.2, uncharacterized protein LOC116621573 isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032387439.2

CTCTCGTGTGGTCTCGTACCGATAAATATCTCACATTGATGTTGAACAATAAATAGAGTTCTTTCTTAGTCATGTAACTATACTCCTGGACACCTCCACAGGAATCAAATCCAAAACAGTATGCTCTTCACTAATGTGTGTATACTTCGCTTTATATCCCTTCTCCCTGTATATCACTTTGTTGCTGGTTTTGgtattttatttgtgaaaCCCTTGCTAAACACCATTTTTATGAAAAACTTTGCGAGCATTGCATAtctaaaaatagaaatgacCCCCAAGTGAACAAAAGATACATTAGGCCTTAAAGATACGACGAGCACGTAACCATACTTTGGGCGTAGCCCAGCATATAAGAATAATGTGTGGATTTTCATGCAACTTTAGGCAGTGTTCGTTTGCTCGTGCGATATTTTTCAAGTGCCTATATGCTTGCCTTTCTTATCACGGTGGCCCTTTGTTGGTTCCCGCAATACGAAAGAATCGGTTAAGCAAATCTCGGAAGTCGCCTTATTTTCAGCTGTTGTATAGGCaagaatattttcttttcttaaagtataaagaaaagaaaaacaataaagtaGGTCCCTCATTATTAGCTGTTAAAggcaataattttttttctcttgaaaGTTAcactactttttttttaataaaaacgtCTAATTATCTGtcgaggctgggccgttcttatttttgggattTTAAGCCTGAATCTGTTCTtaaacgatgttcttaaaaatgtgtataagaatataatttccaatgaattattaggaaaagAATACACTAATGTTCAATATCAATAATAAGgctgttactatgagcactatttgattctgcattttagaacgcatcaggactaataaagaaaaacattttctgcTATAGTGTGTAATCTGTTTAGCAAATTTGTGGCGaaggcgtgcgtgacactaagagCGGCTGCTAAGCTGACATACTGTATGGAATTTTTATGTTGTTTCTATTTTGTTAACACAAACGTTTTTTTGGATGCCCGCGATAGCCATATTGCCCAGGTCTTCAGTATCATTCCCgaggttttttttgtaagcaTTTTTATTTCGAGTCACCTTGTTGCTCAAGCAACGCTAGGGCCCGCTAGCACTGTAGCACGGTTGTACACAGTTGTATCCAGTCTCGGGGTTTCGCGGCTCTGATTGGTCCGTCGGTTTCGTCCACGCTCcagcgacttcgactcgaggAAAGATCGACCGAACCGAACGCAGCGAAAACCGCGACTACGAATACACCTGAAAATGCGAAAGAAGCTCCCAGTACACGGACTGTTCTATTTTGAAAGCGACCAGACCGTTAGCATTGTACCATTGAAGAAAATAGTGAGTGTTTTATCGGGAGACAAGACCACGAAGGGTAGCAAGGTTGAGCTTGTTTACGGTACCGCCAAAGTCTCGGCCGAAGTGATCGCAGTCGCAGATGATCTCCCATCTCTTCGTGAACGTGAAATTGAGTTTTTACAAGACCCAGGAAATGCACATTTATTCACAAATCACGACGCCATAGTGTTTACTGGAGACAATCCGGAGGAAGCAGAGGAAAATCCTCCTCTGAAAATGAAAATTGTAAGTCACAGAATTGGCAAGAAACGGAGGGGACGATCAAAGATGCAGGTTGTCGATACTCCTGAATCACCCTCATCACCCTCAGACACACCTGTCTCCCCTGTTCTCAATGCCAGCACACAACATTGTCCAACTGTACCCAACAAACCACTTCCAAGCTTCTTGCCAGCACTTCAGTCTTCCATGTTCCATTCCCTACAAAGCCTCCCTCGCTCTGATGCAGGAATCCTTCAACAGATCCTTCCTATTCTTGGAAGATTGGAGTACAAGATTGATATCTTGATGAACAAAGTTGGCATTGACAAATCCTTCACGGAGGCTTCACAGTATAGTTGCTCTCAGTTAATTACCACACCTAAAATTCAACAGACAGTAGTAGAGACTGACACATTTCACTCAGCTGCTGTTACTAACACATCTGCACCATCAAGCAGGTTGCCTGAAGTACCACGTGCAGTTACCACACTTAAAAGCAGAAAGGTAGCAGCAGAGGCAGCCGCTCTTCACTCAGCTGCTCTTAATAATGCACCCCCTCTATTTAGCCAATTACCTGAAGTTCCAAGTACCATTGCTGTGAATGGCAAAGACTTAGATGTAGTACCAACTCCAGATAAGACAGAGCCATCAAAGGACCCAGAGGGAGAAACAGTTAAAGAGTGGGATGGGTCAGAAGAGGAGGAAGGTGCTTCTCAAGTACCTGATGAACAATGCATCACCACTCCACTCAAACAGTGTCCTACATCCGAGCAGGCACCTGCGGCTACCCCGCATCATCAGCAGTCCACTCAATCAATAACACCAGCTGAGGAGGAAACATACCAAACGATCTTCAGACAAGCGAATTCCATGGCCAATTTCTCTGTGCGACTAATGAGACACCTTTTTAAGAGATCCGAAATGTGTGGTCGAAATGTAAGAGGGGCACGAGGAAAAAAGCCCCTAGATCCTGAGAGAGTGAAGCAGATAAAGTTTCTTATTTACAGGTTTTACTCTGTCCCTCCTGCGGACATGCCTAGATTTTGGACACACTGTCGCAAGTCAATGGATTCCTTTTTACGGAAAATGAAGGAGAATCCTTCACCCTTTGAGGATTCCTCCCTCCCAACATAactttactgttttttttttacaacaatAGTTTGGTTTTCACCATTTAAGGTGACATTTTTAACAGATCTTATATTGTTGCTATGTCAAAGATTTAAATTAATACACCTAAAGCACAGCTGTACCTTACACCTTGCACTGGGGCAAGAGTATTGCTCCTTCCATCTGTAATCCATGAGTGAAAGTTTGGTTGGAGAAAAATAATTTCTTATGTGCATATTTTCCCCCTTGCTGAATTTTCTTGTACAAATGAGATGATGCTTTTCTGAGTTGTGTATTTTATTATGACCATGCAATGCCGTAGCTTGTTATTTCAGCTTTgtatttatattaaaataatgacaagctatttatcatatttatttttcataagaaCATAATACAGTTTTGTATTTAATTTTGTATTAATGTAAGTTGGGTTAATCTTGTGttgttgaataaataaatttgttaTTTA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000665 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10523 all species →	BEN	BEN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033583 all species →	Family	BEN domain-containing protein 3	Interproscan
IPR018379 all species →	Domain	BEN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28665 all species →	BEN DOMAIN-CONTAINING PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000183 all species →	Biological Process	rDNA heterochromatin formation	Interproscan
GO:0000792 all species →	Cellular Component	heterochromatin	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032243330.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032243330.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

38TPM > 0

16Conditions

5.3Max TPM

3.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	2	2.82	4.40
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	3.03	3.88
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	3.16	3.34
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	3.67	4.67
whole 6 week old aboral regenerate · regenerate uncut	3	3	3.05	3.34
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	3.15	5.23
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	2.45	3.92
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	3.73	4.55
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	3.06	5.29
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	3.09	5.00
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	3.90	4.04
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	2.86	4.50
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	4.41	5.06
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	2.62	4.12
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	2.51	4.13
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	1.25	3.76

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.40
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.07
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.88
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.64
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.57
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.34
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.31
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.83
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	4.67
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.73
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.62
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.34
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.20
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.61
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	5.23
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	4.23
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	3.92
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	3.42
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.55
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.96
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.68
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	5.29
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	3.88
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	5.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	4.26
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.04
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.96
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.70
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.50
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.09
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	5.06
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.44
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.74
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	4.12
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	3.75
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	4.13
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	3.42
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	3.76
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.