Gene detail

Detailed information of XP_044168427.1 in Acropora millepora

Genomic Location: NW_025322736.1:62265...104463
NR annotation: XP_044168427.1, ATP-dependent RNA helicase DDX4-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_044168427.1

ATGCCCCCAGTGACATACATTCCACCAGAACTGCCCAGGGACATTGATGAGCTCTTTCGAGATGCACCACATAGTGGTTTGAATTTTGAAAAATATGACAGCATTCCTGTCATTGTCACTGGCAAAGACAAACCACCTCCAATTGAAACCTTTGAACAGGCTGGTATCTTAGACCAATGTGCTACGAACATCAGAAGAGCACAGTTTACCAAGCCAACACCAATTCAGAAGTATGCTATCCCAATAACTCTGGCTGGCAGAGACTTGATGGCCTGTGCCCAAACTGGTTCAGGAAAAACTGTGGCATACTTACTTCCTGTTCTGACTGGGATGATTAAACGTGGCCTGCTTGACAGTGGCAGTTACTTGTCTGGTGGTACTCAGTCTCCTGCGGCCCTCTGTCTTGCACCAACACGTGAGCTGGCAGTGCAGATCCACAAAGAAGTTTGCAAGTTTGCTTATGACACTGTAGTGCAAGCCAAAGTTTGTTATGGAGGAGTTAGCGTGCTGCATCAGTTGGATAAAATACAACGTGGATGTCACTTTCTGATTGCCACCCCTGGAAGGCTTATTGACTTTGTTGAAAGGAGTCGGATAAGTTTGGCCAACGTGCAATATCTTATCTTAGATGAAGCTGATCGTATGCTGGATATGGGGTTTGAAGGTGATGTTCGTAAGATTGTGGAAAAACTTGGAATGCCTGACAAAATGAGCAGACAGACGTTGATGTTTAGCGCCACGTTCCCTGACGAGATTCAGCGATTGGCAGCTGACTTCTTGAAAGAAAGCTATCTGTTTGTTGCTGTTGGCACCGTTGGAGGCTCGAATCTGGACATAAGTCAAACTGTCATTTCTGTTGCTGGAGATGACAAACAGGAGAAGCTTTTTGACATTTTGCTTCATTCTGGCACCGACCGCACGCTGATATTTGTGGAACTGAAGCGAGTTGCAGATTTCTTGGCGTGTCTCTTATCACAAAACAAGTTCCCCACCACAAGCATTAGTGGCGACAGAACACAACAGGAGCGTGAGGCTGCTCTGCTTGACTTCAGAACTGGCCGAGCCCCAGTCCTTGTTGCGACGTCAGTGGCTGCACGTGGTCTTGATATTGCAGATGTCAAGCACGTGATCAACTATGATCTGCCCCAGGATATTGATGAGTATGTGCACAGGATAGGGCGCACAGGACGAATTGGCAATAAAGGAAAAGCCACATCATTCTTTCAACCTGACAGAGATGAGAAACTTGCTCGCAGTTTGGTGAAGGTCTTATCACAGGCATACCAGGAAGTCCCTGAGTGGCTTGAGCAAGTGGCAGAAGAGGCAGTTGGCTCATCATATGGGCCTGCTGGAGGAAGATTCGCTTCCAAAGATAGAAGAGAGATGAGCTCCCCGACGTGTGATTCTGATTACAAGTATGTGGCAACAGCTGAAGTTGAATCGTTCGTAGAGCGTTGTATGATAGCTGTTGGAACTGATCCACAACATAGTAACGCACTTGCGCAAGTCCTGAGAGAAGCTGATTATCGGGGACATGTCTCACACGGCCTCAATAGATTGGAAATTTATGTCCGTGATATAAAAAATGGCGTGATGCAAGGACAAGGTGAACCAAGCATTGAAAAGGAAACAAGTTCCACTGCTTTGGTCAATGGCAATAACTTACTTGGTCCAGTTGTTGGTAACTTTTGCATGGACTTAGCAATCAAGAAAGCAAAAGAGCATGGGATTGGCTGGGTGGTTTGTAAAGGTTCGAACCACTTTGATATTGCAGGATGGTACAGCTCAAGGGCTCTTCAACATGGCATCATTGGAATGTGTATGACCAATACATCACCAGTAGTTGTGCCCACAAGAGCTGCACAGCCATCAATTGGAACCAATCCTCTGGCAGTAGCAGCGCCTGCAAAGGCGGGGGATAGCTTTCAGCTGGACATGGCTACCTCAGCAATGGCTTTCGGAAAGGTAGAAATGTGTCGGAGGAAGGAAATGGAGATGCCGTCAGGCTGGGGCGTCAATTCCAAAGGAAAGGTCACTGTCAATCCTCAAGACGTTACGCACGGAGGTGGAGGGCTGCTTCCCTTAGGAGGACAGGAAATAACAGGTGGCCACAAAGGTTACGGTTTGGCCATGATGGTGGATGTGTTCTGTGGAATTTTATCAGGGTCTTCATTTGGGCCAACCATGCGCAAATGGCGAGGGGATAACGAAAGAGTCGCTGATTTGGGACACTGTTTTGTCGCTGTAAACCCACAGATGTTTGCCGACGGGTTTGAAGATCGCATGCAGTGCCTTTTGGATCAGTACAGAAACTTGCAGCCAGCAGAGGGTGAATCTGCAGTACTCGTGGCTGGCGATCCTGAGAGAAAACATATGCGCAGAGTCGAAGGAGAGGGTGGAATTCGTTACCATGTGAACTTGCTGCGTGCTATGGATGAACTTGCTGAGACATTGGGCGTGGCACATTTACCAACATTGTAG

Transcript

Protein

Uniprot

Uniprot term	Description
Q3MSQ8	Probable ATP-dependent RNA helicase DDX4 OS=Pelophylax lessonae OX=45623 GN=ddx4 PE=2 SV=1
Q61496	ATP-dependent RNA helicase DDX4 OS=Mus musculus OX=10090 GN=Ddx4 PE=1 SV=2
Q9NQI0	Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens OX=9606 GN=DDX4 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF02615	Ldh_2	Malate/L-lactate dehydrogenase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR003767	Family	Malate/L-lactate dehydrogenase-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR043143	Homologous_superfamily	Malate/L-sulfolactate/L-lactate dehydrogenase-like, NADPH binding domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR043144	Homologous_superfamily	Malate/L-sulfolactate/L-lactate dehydrogenase-like, alpha-helical domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR036111	Homologous_superfamily	Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11091	OXIDOREDUCTASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11594	DDX3X, bel; ATP-dependent RNA helicase DDX3X	EC:5.6.2.7	Chromosome and associated proteins	ko03036	deepkoala