Gene detail

Detailed information of XP_044168830.1 in Acropora millepora

Genomic Location: NW_025322765.1:18768...49185
NR annotation: XP_044168830.1, chromodomain-helicase-DNA-binding protein 1-like isoform X3 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_044168830.1

ATGTGTTTGCGAGAGACAACCTTTCTTTCCAAATTCAGTTGGAAAGCATTGGTTGTAGATGAGGCCCACAGATTGAAAAACTCCAAGTCAATGCTTTATCAAGAGCTTTCACAGTTTCAGAAGGACTTTGTTGTGCTGTTAACAGGGACACCAGTCCAGAATAATCTCAGTGAACTGTATTCCCTGCTATCATTTATCAGCCCCAATATTTTTTCATGTGATGCTGTGGAGGAATTTTTGGAAAGGTACACCAGTGTTTTCAACTGTGCAGAAAGAAATGCAGAATTACAAAAGCTCTTGTCACCTTTTTTGTTGCGCAGAGTGAAATCAGAGGTGATGGCGCATTTGCCCAAGAAAACAGAGGTTCTTCTCTATACAGGGATGTCAGATCTGCAGAGGAAGTACTACAAAGCGATTTTGATGAAAGACTTAGACGCGTTTGATTCTCCTGTTGGAACGAGTAAAACAAGACTTCTAAACATTCTTATTCAGCTTAGGAAGTGCGTCAACCATCCTTATCTATTTGATGGCGTTGAACCAGAGCCATTCCGACTTGGTGAGCACCTCATAGATTCAAGTGGAAAGCTCCAAGTTATTGATCAGCTGTTGATATTTCTTAAGGCAAGAGGGCATAAAGTTTTGATGTTTTCCCAAATGACAAGAATGTTGGACATCATTCAAGACTATCTTGGTTACAGAGGATATTCATATGAGCGATTGGATGGTTCTGTCAGAGGGGAAGAGCGTTACCTGGCAATTCAGAACTTTAACGACACAGACGATACTTTTATATTCCTCTTGAGCACTCGAGCAGGTGGTCAAGGATTGAACCTGATGTCTGCTGACACGGTCATCTTTGTTGACAGCGACTATAATCCGCAGAACGACCTACAAGCCGCAGCACGGGCTCATCGAATTGGCCAAACGAGGCCCGTGAAAATCATTCGTCTTGTAACCCGAAGCACAGTGGAGGAAATAGTGTTGAAAAGAGCAGACGAAAAATTGAAGCTGACCAATGCGGTGATAGAGAACGGAAAGTTTTCTGGTGGTGCATCAGCTATAAACCAAATCGCAGAGACTCCTACTCAGCTTGCAGACTTGCTCAAATTTGGCTTGGACAAGTTATCTGAATCTCAGGAAAGCGCAGCAACGGAGAGAGACCTTGAGAGGATCCTAGGAGGGAGCTGTGACAATAAGTGGATTGTAGAGCAAGAGACTGGGGATGAAAGTATTGGAAATGGCGATGATGATGATGATGTGACGTCATCTATGCAGATAGATAATGATGACGGAAATGTGGAGAATATGTACGTGTACGAAGGTCGTGACTACTCAAAGGAAACAACCGACAGAGATCAACAAGCCTTTGATAACATGGTAGCAGAGATATTAACAAAAGCTCAATCAGAAGAGAGGATTCTCCGCGGGGATGAGCGAAAGGAGAGCATTGCAACAAATTATTTTGATCCTCCGGCAACCAGAAAGCGAAAAGTTCTTACACCAGAAGAACTCGAGGAACGACGAAGGAAGAGGGAAGAGAATGCTTTAAAAAGAGCGAAATTGCAAGAAGAAGCTGAAGTTAGACGAGAAATAGAAAGGCAAAGGAAGCTGGAGAAATTATGGAAAGATTACAATTATGTAAGCCTCAACACTGCCTTAGACGATGACGACGACGAAGATGTCGATGAGGAAAGTGATGCACTTGATGAAGACGATGACAGTGAAAGAAAGGATATTCAGTATGTGCGTGGTGACGTCACACATCCCATTAAAACTTGCAGCTCTGATGCAATCATTGTGCATTGCGTAGATGACTCAGGTTGCTGGGGTCAGGGAGGTTTATTTTCTGCCTTATCTCGTCGATCTTCGCAACCGGAAACTCGGTACGAGCTGGCAGGCAAAATGAAAGATCTGAACCTCGGAGACGCTCATCTTATTCAAATCGATGATCAAGATGGAAGGAAAGATGGTCATGATTACGTGGCTTTAATCGTTGCACAGTCACGTGACCGCAAGAATCAACTGTCAGCCATTTTGCTGACGTCTCTGAGCGAGGGTCTGAGGAGAGTTTCATTGACGGCCAAGAGAATGAATGCCACTGTCCATCTCCCTCGGCTCGGTTACAATACTCCAAGCTTTAACTGGTATGGAACAGAGAGACTGATCCGTAAGCATTTGGCGTCCAAAGGAATTGAAACGTCAATATATTATTATGCAAGGCGGCATCAAGTGTCGAGTGGATCATTAACTTTGCTCGCTTCAGCATCAAACGCTGGAGATCCAACCTCGACCCAGAACAGGAATAAAAATCTTAAAGACGACAGTCCCGCTTGTGTTGATTTCAGAGGAAATCTCCCAAACTTCATGCGCGGTGTCAATGTTTTCTTTTTTAATGTTGACGAAGATGAAAAGAAGAAACTCACACGCTACTTGGTTGCTTACGACGGGGAAGTGTCTCATTTTGCCTGCCAGAGCGTTACACATGTGGTTTGTGATAAGCAGGCTGGCACGAGTATTACGTTTGAAGATTGGATGGTTGGAGTGAAGATTGTCAGTTCTAAGTGGCTCGTTAAATGTTTCAAAAAGGGTCGACAAGTAGACACAAGACTTTACGAAATAGAAAACAGCTGA

Transcript

Protein

Uniprot

Uniprot term	Description
Q7ZU90	Chromodomain-helicase-DNA-binding protein 1-like OS=Danio rerio OX=7955 GN=chd1l PE=2 SV=1
Q3B7N1	Chromodomain-helicase-DNA-binding protein 1-like OS=Bos taurus OX=9913 GN=CHD1L PE=2 SV=1
Q86WJ1	Chromodomain-helicase-DNA-binding protein 1-like OS=Homo sapiens OX=9606 GN=CHD1L PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF16759	LIG3_BRCT	DNA ligase 3 BRCT domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001357	Domain	BRCT domain	Interproscan
IPR036420	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR043472	Homologous_superfamily	Macro domain-like	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR031053	Family	Chromodomain-helicase-DNA-binding protein 1-like	Interproscan
IPR002589	Domain	Macro domain	Interproscan
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR031916	Domain	DNA ligase 3, BRCT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47157	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003678	Molecular Function	DNA helicase activity	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20092	CHD1L; chromodomain-helicase-DNA-binding protein 1-like	EC:5.6.2.-	Chromosome and associated proteins	ko03036	deepkoala