Gene detail

Detailed information of XP_044171034.1 in Acropora millepora

Genomic Location: NC_058067.1:6455547...6515937
NR annotation: XP_044171028.1, nuclear pore complex protein Nup107-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_044171034.1

ATGGAGGCAACAGACAAAACTGGAAGCTCAGAAATGATAGAAATGTTTGGTCCAATACCAGCAGAAGACACAAAAGTCAGAGATGAAAATCGAAGCAACACTTTGAAGCGCAGAAGCCACATTAAACGATCACTTCATCTTTTGGACGAATCTATGGCCACTCCACGAATGCCGTTACACACTGCTTCATCTCTGCTAAGAAAAGCCAACACCCCTTCTCCACTGCGTCAACTACCTCTATCATCTATGGTTGGTGCATTATCAGAAACTGAATTTGATCTGACGTCTGAGCATGGTTCTTATCTCAGTGAAGGCCTTGGTCCTCTCTCCTCTCAACTTCCACCTATATCCATGCTGGGCTCCTTGTCATTCATGGAGACAGGTGGATCAGGTCAACCTCTCATTCCCAACGAGCCCCTCACGCCACATAATGCTCAGGATTTTGCACTTAGAAGCACTGAGGACTTATCTCAGTTCACTGGAAATGTCACTGTGTCTTTTGCAAAGGACGCTTTAGATGCAGACAGTTCAAGATTGTATGAAGAATTCATGAATGCAATGACATCCTCCCCTGACACACAACAGATTTTTGATGTGATAGCAAATTATCAAAAGGCATGTAGAGAGCACCGAAGACGTTTAAACAGACTTATTAGACAGACCACACCTGAGAAAACCAAATTTTCCCACCAAGTTGATATTGAAGATCTCATTTCTCAAGAAAGTTACACCTGGAGACTTATTGGTTCATTATACAGTGATCGTCTCCAGAATGGAACCTCTGATGAGGAGGTCGTGCTTCCAGAATTTGTGGGGAAACATTGGAGTGAGAAGACCATTGTAGAGAAGCTGTATGAAATGGAAGCTTCAACCAGACAAAGTCAGATTGTTATTGACTGGCTGGAGAAAAATGCTGAGGATTGGCTGGAAATCTTTTTGGAGGCTGAGACAGTGGAATATTTTTCTGAATCTGTCTACTGGGAAAATACTCTTCATGCTCTGAAACAAGGAGGTGGGAATTTAGGAAGAAGAAGGCCACTAGTTACAGAAATGGATCCAGATGCCCCTGGGAGACAGAACAGGCCTTTGCATGACTTAGATCAGGAAGATGAAACCAGGTTGTTGCGGCATATGTTTACCTTCATAAGAGCTGGCAAACTAAAAGAGGCTCAAGACTTATGTGAGAGATCCAATCAGTATTGGAGGGCAGCTTCTCTTGAAGGATGGAAGCTTTGGCATGATCCAAATATGAATGGAGAGTTGGAGAACACAGCTCTTGCTGCAACTGAGGGCAATGAAAACAGAGACTTGTGGAAAAAATGTTGTTGGGGACTGTGTGAAAAGAGCAACTACAGCATTTACGAGAAGGCCATTTATGCTGCACTCTGTGGAAATCTAAGCAAGCTTCTTCCAGTGTGCAGATCATGGGAAGATTATTTGTGGGCATTCTTTAAAGTTATGGTGGATGTCAGAGTTGAGCAGGTCATTCGCCTCCATGCAAGGGCTGGCAATCCACTGGAAAACTTGCCTCCAGAATTCTGGGACCAGAACTTGAACCCTGAAAAAATCTTTGAAGAAATTGGGGCTTGTCCAGTAGAATCTGTCAGACGTCATTCAAATGACTTTCATCATGTTATACAGAGGCACATCATACTAAATGACACAAATGGTTTGATCGAAAAAATGTACAGTTGGCTCCAAAAGGAAGAGAAACCGATGCCACAAATAGTACGATTTATGGCGCATTTGGTTTTGTTCTTGAAGTCAGCTGGAATCGAATCTGAGACTGATCCTGATCATTGCGTTGCCATCCTTAAGGCCTATGTACAGGTTCTTATTGACGAGAAGCAGATCGATCTTGTGGCCACATATACTGCTACGCTCCCCCCTGAAATACAGACTAGGACTTATGCATACTTTTTGGAAGGTATTGATGATACCAAACAAAGACAGAAATGCTTGGACTTGGCAGATAGCGTTGGTCTTGATGTCCCACTTATAACGAAGACTGTTGTAGAGAACATTCGTGGAAAGGAAGATTTTAAAATTGATGGAGGGATATCGTCCTCTCTGGAAGCTGTTACTTCAAAGGACGACCGTAAAAAGATAGAAGCTATAGAATGGCTGATGTTTCATCGATCCCAGCGAAGCGAGGCATTGAAGCAAAGCAATGCAATCATACGATGCTTTATTGCAACTCGCAAACATGCTGCAGCTCGTGAAGTTTTTCAGAAGATTCCACCAGACTCGATTGATGTGATTCACAAACAGTGGGAGATAACGGGCGGATCAACTGCATTACCCCCTGGAGATGACAACGCCATCAAGGAATATCTTTGTATCAGAGCTTACTTGGAGGCAATGGATGGATTCGATTATTGGTTTCAACATTTCCATCAAAGCGTGCCATTAAAACCACGACACGAGGAGTACACTAATTTCACCGAAAAGGTTGCGTTTGAACAACGCTTGAAGGACTACGAGGTGGAATTTGGAAGATGGAAAAACTCACTCGATATTCACACAAAGGTCACTGTTGAGAAGCTTTATAATGTTCTTTTGTTCCCTGATGGAGGATGGATGGTGGATCAGGGTGAGGAAGAAGAGGAAGATTCAAGCCGAAAGCATCAACTACAGTTGTTACGACAACTCTGCCTTCCACTCATCTGCTTTCTTCTTCACAAAGTATTGCACTCAACAGAGCAGTACAAGCAGTGTGTAAAAATTGCCGATGTGATTGCCTCAGAACAGTATCAGTTGTATAAGGTTTTCAGGAAGGACGAGTTGCAGAAGATGCTTTCGCTGTTAAGAGATACATCTCTCGAAGCCTTGGGAAAGAATCTGGATCCACTGGGTTATGACATGGAACACAAATAA

Transcript

Protein

Uniprot

Uniprot term	Description
Q8BH74	Nuclear pore complex protein Nup107 OS=Mus musculus OX=10090 GN=Nup107 PE=1 SV=1
P57740	Nuclear pore complex protein Nup107 OS=Homo sapiens OX=9606 GN=NUP107 PE=1 SV=1
P52590	Nuclear pore complex protein Nup107 OS=Rattus norvegicus OX=10116 GN=Nup107 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04121	Nup84_Nup100	Nuclear pore protein 84 / 107	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007252	Family	Nuclear pore protein 84/107	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13003	NUP107-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0000973	Biological Process	post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0006406	Biological Process	mRNA export from nucleus	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0031080	Cellular Component	nuclear pore outer ring	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14301	NUP107, NUP84; nuclear pore complex protein Nup107	-	Chromosome and associated proteins	ko03036	deepkoala