Gene detail

Detailed information of XP_044175753.1 in Acropora millepora

Genomic Location: NC_058069.1:3029567...3044517
NR annotation: XP_029195977.2, pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_044175753.1

ATGTGGCTTGGATTCTTAAAAGCACAGAGCAGGCTCTTTAGAAATGTTCCAGGGCAATCATTGGCCAATGCAAGATCACCAAAGGCATTGTTTGCCTCCAGAAGTCTTTTCAAGGAAAGAAAACGTTGCTGTTTTGGCACAAGCCAACAAAGACACCTGAACTCTGATGCTTCATTACCCAAGGAGGCCGAGATAGTAATTTGCGGTGGTGGAATTGTTGGTTGCTCTGTGGCTTACCATCTGGCCAAACTTGGATGGAGGGATGTGTTGCTTCTTGAACAAGGCAGTTTGACATGTGGAACTACATGGCATGCAGCTGGATTGTTGGGGAAGTTGCGTTCTACTGCAATTGAAACAAAGCTGTCAAGCTACTCTGTAGAATTATACAGTAGGCTGGAAGATGAGACAGGAGTTGGAACTGGGTTCAAGCGATGTGGTGGGCTGCTTGTTGCACAATCCAAAGAGCGTCTGACTTTGTTTAAGCGAAGAGCAGCAATTGGCAGATCATTAAACATAGATTGTGAGGTGTTATCTGCAAGTGAAATTCCCAAAGTGTTTCCTCTGGACTTGAGGACTGATGACTTGGTGGGGGCCCTTTGGATTCCCAGCGAGGGTGTTGCAGCTCCAAGTGACGTTAGCTATTCACTGGCAAAAGGAGCAACACAACATGGTGTAAAAGTTTTCGAAAAGGTTTCAGTAGAATCTGTCATGACAGATGGCAAATCTATCACTGCAGTGGAGACAAACCGGGGGAATATCAAGTGTGACATACTGGTCAACTGTGCTGGGCAGTGGGCATGGCAGCTGGGACAGAAATGCGAGCCCAAAGTGTCCTTCCCGCTTCATTCCACGGAACATTTCTACATAGTGACCAAACCGCTTGATGTGCCTTCCATGATGCCAGTACTTCGCGATCACGATGGGCAGATTTTTATTCGGGAGTGGAGTGGTGGTCTATTGTCTGGAGGTTTTGAGGCGGAGAGTCTGCCTGTCTTTCACGAGGGAATTCCCAAAGGGTTTGAATTCCAGCTTCTCCCGGAAAACTGGGAACACTTTGGGCCCATGACAAAGAAAATGCTTCATCGCTTACCACTAATGGAGAACGCCCAAATTCGCTATATGACCAACGGCCCAGAAAGCTTTACACCAGATTCGCGTTACTTCTTGGGAGAGGTTCCCGAGGTGCGCAATTTCTATGTGGCGGCTGGTTTTAATTCTGGGGGCATTGCTAACGCTGGTGGTGCAGGAATGGCCCTTGCCGAGTGGATCACTGCTGGAGAGCCCACAATGGACCTTTCTTCTGTGGACATACGTCGCTTTGCGTCTCATCACAATAACAAGCGCTTCTTACGGGAGTGTGTCAGGGAAACTCTAGGCTGGCATTACCATCTGCGCTTTCCGTATTCAGAGAGGATGCGAGCGCGTGGTGTCAGATGTTCACCGCTTTACTCCGATCTGGATGACGCGGGCGCATCATGGGGCGAGAAGATGGGATGGGAAGTGGCCAAGTGGTTTTCTCTCCGTGGAGATGGTGACCAACCCAAGAGTGGCTTTGGTAAACCAGGTTGGCTTGACAGCACAGGGGTGGAGTACAAAGCGTGTATTGAGGCAGTGGGTGTGGTAGACATGACCTGCCTGGGATTGTTTGAAATCGAGTCACCTATTGAAGGAGAATGTGAGACCTTCCTTCAATACGTGTGTTCGAATGATGTTTGTGTTTCTGTGGATCACACTGTTGATACACTGATGCTCAATAAACGAGGAGGGATAGAACTCAAATGCACAGTGATTAAAACCACGCCGTACAGATTTCTAATTTTACTCCACGATGCTGAAAGTGTAACCTTCGCTCAATCGTTGATTTCAATGAACATCCCAGTAGATTCTGCAATCACACTTCGAAACATCCAATCCGGGAATGTTATCCTAGGAGTCCTGGGACCAAACTCGCGCCATCTAGTTCAAAGTTTGACCCAGACCTCTCTTGATGCCGAGCAGTTCTCATCAAACGCAGCACAGGTAGTTGACTTGGGTTATGCTTCTGGAGCAAGGATCTTTAGGACGAGTTGCTTTGGCAACCAGGCCAATGACTGGCAGCTTTTAGTTCCTTCTGAGTTTGCAGTCTGCTTGTACCGTGACGTCATGGAGGCTGGACGAAAGCTGGGTGCCACAAACGTAGGCTACTCAGCAGTTGACTGCTTGAGGATAGAACGATCGGTTGCTCAGCTCGGAAAGGAACTCACTTCATTTATAACCCCAAGGGAAGCAGGATTAATGCAGTTGGTTCAACTCGACAAGAATCAAGACTTTATCGGCAAGCAAGCTCTTCTCGAATCCCTGCATCCAAGTAAACATCTGGTTCAATTAACTCTTCTAGAGCACGATGATAACAACTTCCCGTGGGGAGGGGAGGTAATTCTTAGAAATGGTTCATTTGTAGGATCCACAACAAGTGCTTGTTACAGCTTCAGGGATGGGAGGCCTGTGTGTCTGGGGTACTTAGTGGGGGAGGGCAAGAATTCTAGTGTTCCAGCTGGAGACTTTCAAATTGAGATAGCAGGAAGCTTGTTTTCTGTTTCGGTTACAAATCTTTGA

Transcript

Protein

Uniprot

Uniprot term	Description
O46504	Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial OS=Bos taurus OX=9913 GN=PDPR PE=1 SV=1
Q8NCN5	Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial OS=Homo sapiens OX=9606 GN=PDPR PE=1 SV=2
Q7TSQ8	Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial OS=Mus musculus OX=10090 GN=Pdpr PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01266	DAO	FAD dependent oxidoreductase	Domain	Interproscan
PF01571	GCV_T	Aminomethyltransferase folate-binding domain	Domain	Interproscan
PF08669	GCV_T_C	Glycine cleavage T-protein C-terminal barrel domain	Domain	Interproscan
PF16350	FAO_M	FAD dependent oxidoreductase central domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006076	Domain	FAD dependent oxidoreductase	Interproscan
IPR006222	Domain	Aminomethyltransferase, folate-binding domain	Interproscan
IPR013977	Domain	Glycine cleavage T-protein, C-terminal barrel domain	Interproscan
IPR029043	Homologous_superfamily	Glycine cleavage T-protein/YgfZ, C-terminal	Interproscan
IPR032503	Domain	FAD dependent oxidoreductase, central domain	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR027266	Homologous_superfamily	GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13847	SARCOSINE DEHYDROGENASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0005759	Cellular Component	mitochondrial matrix	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17509	PDPR; pyruvate dehydrogenase phosphatase regulatory subunit	-	Protein phosphatases and associated proteins	ko01009	deepkoala