Gene detail

Detailed information of XP_044176371.1 in Acropora millepora

Genomic Location: NC_058070.1:6975231...7003589
NR annotation: XP_044176371.1, uncharacterized protein LOC114963934 isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_044176371.1

ATGGCTTTCCTACTTGAATGTGCACTTTTGGGATTTACTTCCTCTCTGATTTTTCTAGCTGAAGCAAGAACATGTGAATATAATGAGTATATCATTGAGTCTAGATCCGGGAACTTAACTTGTTTGACGTGTCATTCTTGTCCAGCTGGATTTGGTTTGGTTCCAGAATGTGGCAAAAGGATCAAAGACAATGAGATCAAAAATAAGTGCAAGCAATGTGTGCTTGGAAAAAACTACTCTGCACATGAAGATATAAGCTCCTGTAAGCCTTGTGGTTCTTGTGCTGATCACCAAACAGTCGTGAAGAACTGTACTTTGGATTCTGACTCTCAGTGCAAGGATACATGTTCAAAGGGGTTTTACTTTGAGCATCTGACAGGTGACTGTCAGCCCTGCTCGTGGTGCTGCTCTGATGGGAGTAATAAGGTTAGGAGTGGGTGCAAGGATATGCCACGTTACAAACAGTGTGATGTGAACACAGCAAGGAGGTGCAAACCCAAATGTCAAAGTGATCAATATGTTGTTCCTGGAAGCAAAGGTGGGGGGCACTGCCAAGACTGTAAAGTATGCCGTCCTGGAACATCACCATTCCCAAAATGTGGTAGTGTGGTTGAAGACATCAACAATATCAGTTGCAGAGTGTGTATTAAAGGTCAAACATTTTCAGACAATTATGGAAAAAGTCCATGCAAACCTTGCACTAGATGTAGCATTGAACAGAAAGAAGTATTGCCTTGCAATCGGGAAAATGACAGGATATGCAGTTACTGTGGCAAAGGCTTTTACAGTGATAGCAACAGCACCAACTGCAAACAGTGCTCTGTTTGTTGCAATAATGCCGAAGATGTACGTGTTGAACAATGTGCAAAACAGAGGATGCCAAAAAAGTCGCAGTGTAGTTTTGTCAAGGGAAGAAGAAGTCTCTGTAGACATCGAAGAATTGAAGAAAGAAAGCCAATTTCTCCAGTTTGGTTAGGAGTTATTGTGGCTGTAGGAATTATAGTTGTTGTTGCGACTATCATTTTAGTAGTGTTATGTTGGTATCGAAGGTTTTGCAGGCAGGTTACTATTGTAGTGGAAGAGTCAAGTTCCTTGCTTACGTCTCCTGAACAAAAAGTTGAAACCAGCCAGCAAGAAACTGTGAAGTCTTTTGACAATTCTGGTGTCATTGTCCATTTTAATGATCATCTTGAATTCCAAGATGTCAGGTCAGAAATTTGCTGGGATGAAGCATTGTGCATTAACTTGCTCAATGATGATGAAGTTCAGCTCAGTCCTGTTGTTGTATTTCAACCCCATGGCTCAAGACTGTCCAACCAAGTACGTGTCAGAATTCCACACAGTGCATTGTTGGATTCCAGCCACGGATGGAGCATTGGACTTAAAAGCTCAGCGTTAAGTGGGGGAGCAATTGTTTGGAAAGACGAGACGGTGGACGGAACCCAATATAATGAAGTCAGCTTTTGTACGAATTGTCTTCTTTCATATGTTGTTGTGGGGACACCAGCTGGAAATTCCGATCCTACAAAGAAACGTTTTTACTGTGTAGTCTTTGGAGGACAAGGCAAAGTCGGTCCAAACTATTCCGTATTTTTATATGTGATTGATGAATGCGATGCGTCACTCGAGAAAATCGTTCAAGATGAAAAATCTAGGAAGAGGATTCTCTTGAGTTCTGTGCATTCACTTCATGTTGAGTCTGTATATGAGACAGATGTGAAAGTAGCAATCAAGCAACTTTCTAACAGCTGGAAAATAGCATCCAAGAATCCTTGCGTCATATCTCACAAGAGTCTAAGGCAATCCTACCAAACTTTCCCTTGTGCTGAAATAATATTTGCACATGATAATGGCCAAAATGGACAATTTCGCTGCACCTTTGAACTGACATCAGGTGACACCACCAGCCAAATATGTGTGAGAACTTCAATCGGAGAGGACCCATTTGGGAACTACAAGGAAAGTGGTATGTGTTGGCCCCATGAGATGGTAACTGGGCATGGTGCACATGCCTCCAAGCCTTTAGAAAGTCTTGTTCATGACCTTTCTAAGTCTGTGGAGAAGATTTTTCAACGTTTGGACACACGCACTGAAGGAGCTAGTCATTATGATTATGAAGTCATAAGTAACCATTTCGGCCACGACCATTTTGAAGTAAAATCCAGGTTTGAAAAGTCTGACGGCGGCCCCTCCAGAGCAATGATTGAGGCCATTGTTGTTCGCCAACCAAAGCTCACAGTTGAGGAGTTTGCAAGAGTGGTGGAAGAGAAAACGCACCGAAACGATGTTGCTCGCTTGCTGAGATCTTATGATCGTGATTCGCTGAGTAAGTCTGGAGATTTGTCGCTCAGTTTAGAATAG

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00020	TNFR_c6	TNFR/NGFR cysteine-rich region	Domain	Interproscan
PF00791	ZU5	ZU5 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001368	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR052302	Family	Neurotrophin receptor-related death domain-containing protein	Interproscan
IPR000906	Domain	ZU5 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46605	TUMOR NECROSIS FACTOR RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005035	Molecular Function	death receptor activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007266	Biological Process	Rho protein signal transduction	Interproscan
GO:0009986	Cellular Component	cell surface	Interproscan
GO:0015026	Molecular Function	coreceptor activity	Interproscan
GO:0048406	Molecular Function	nerve growth factor binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24468	SCUBE1_3; signal peptide, CUB and EGF-like domain-containing protein 1/3	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala