Gene detail

Detailed information of XP_044176524.1 in Acropora millepora

Genomic Location: NC_058070.1:9938752...9954339
NR annotation: XP_044176524.1, uncharacterized protein LOC114972101 isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_044176524.1

ATGAGACAGCTAGCGAGCTTGTTAATTGTCTGGAGTTTATTATGTTGCTGTTATCAAGAGAATTTGGTTGAGAGTTTATACACCCCCAAGTGTGGATCAAACCAAATGACAGTCCAGTGGTCAAATGGTACTTTTAAAGAATGTTTGCATTGTGAGGAGTGTCAACCAGGCCGTGGATTGTACCCACACAAATGTGGTGAAACTGTAACATTTCCAGTGATAATTGAGTGCAAAAAATGTGAGAGCGGAAAGACATTTTCAGATACATATGACAGTAGCAGTTGTAGGTTCTGTCAGTCGTGTGCTGAGCATGAAGATGTAGCAAAAGAATGCACCCCCAGCTCAGACACTAAATGCAATGGGACTTGCACCTCTGACCATTTCTTCAGCAAGCCACAGCAGATTTGCAAAAGGTGTTCTTACTGTTGTTTGGATGGCAAGGATGAGGAACAACCACAATGCATAAACAAGGGATTAAAGGCTGCTAATCGATATTGCAGTCCAAGACCAGACCGTACATGTACCCCAAGTACTCCAACAGGTACAGCGATATCTACTGAGTCAAAGAGTTCAACTAAGCGTACTCCAACAGGCTCAGTTACTCCAACAGGCTCAGGTACTCCAACACTTAGCTCAGTTACTCCAACAGGCTCAGTTGTATATACTGTGCCCCTAAGCAGCTCACCCAAGCATCCTAATGAACCAGCATCTCAACAACAAAATTGGAAACTTTCTTTAATATTGTCATCTGTGGGATTGGGCTCATTGTTTTTATGCATTATACTTGGAGCAATATATTGCCTGTGGAAGAAGATCTGGAGGAGAAGGAATAGAGATTGTAATTTGAGAAATACATCAAATGTGAGGGAAGAGAGTGTTTGGATTGAAAAAAAAGAAAACAAGTTTATAATAGGATTGCCACAACTACAGAATCCAAGTTTTGTGCCAACTCCACAAGGATCACATACAGGAACACCTTGTCAGACTGATGATGAACTTGATGAGTTGCCGGATGTTGAATCTGTAGACCCAAAGCATTCTGGGTGGAAACCAGGCAGAACCACGGGGAGATCAGGCAGAACTGAAGAGATAAAGGATGTTAGCTTAAGAAAGAACCAAGCTGAGCTCGATGACAAAGAGGTGAAAAATGCTCAAACTTCTGGCACTGTTGGTGGAAAAGAAGCACAGGGTGGACGTGAGAGAAAACCTTCAAAAAGTGGCCAAATACTTCGCCGGTTACCCAGCATTTCCAATGATTATCAGCCTTTGCCAGTAGAGGATCCAGACCAGTCTGCAGAAGTTTCAGCAGTTGTTCCTCAGAGAAAGAGGTCCAAGGGTAACCCACTTTTTAACGCACGGAGGAAATCATCCGTCCACGCCATTACTAAAGAGAATACAGATCAACCTTCAGACCAGTCTTGGCCTCCAGAAGAGGTTACCATCACGCCGTTTCCAAAGATACTACAGGCTGGTTCAAGGGTGGAATTTCATTGCACTGTGAGAGGATGTCAACAAGTGTCTTATCAGTGGTATAAAGATGAGCAAGAGTTACAAGGAGAGGATAATGCAACCCTTATCCTTAATCCACTCAAAGTACAGGACTTTGGCTTTTACAAATGTGAAGTCAGAAGGGACAAACGGTATGATTCAAGTTGCGCTGAATCGCAAGTGGAAGAGCTCAACGTCACACCTGCTGAAGGAAAAAGCTACAGAGAGCTATCAGAGGTTTTTGAGAGTGATTTTAATTTAAGAGAGACTGTGGCAAAGCTACTTGAGAAGAAGACTGCATGCAGAAAAGCATACAAACACGTTGCTTCCCACTTCAATATGAAAGATGTTGATAACCTTGAGGGAAGAGACAATCCAGGAGAAGACGTTCTTGTCTATCTTGAAACAAACCATCCAAACTTAACTGTTTACCGCTTCTGTAAGGCACTCAAGGACAAAAATATAAGACGGCTTGATATTGCAAATAAATTGGTAGGTTATCTTATCCAGATAGATCGTCACGATACAAAGGCTTAG

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR001368	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR052302	Family	Neurotrophin receptor-related death domain-containing protein	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46605	TUMOR NECROSIS FACTOR RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005035	Molecular Function	death receptor activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007266	Biological Process	Rho protein signal transduction	Interproscan
GO:0009986	Cellular Component	cell surface	Interproscan
GO:0015026	Molecular Function	coreceptor activity	Interproscan
GO:0048406	Molecular Function	nerve growth factor binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04722	TNFRSF10A_B, TRAILR1_2, DR4_5, CD261_2; tumor necrosis factor receptor superfamily member 10A/B	-	CD molecules	ko04090	deepkoala