Gene detail

Detailed information of XP_044176777.1 in Acropora millepora

Genomic Location: NC_058070.1:28685317...28701237
NR annotation: XP_044176777.1, protocadherin-like protein [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_044176777.1

ATGCTGCTCTATACCTTCAAGTTCGTTTTTTTCATTTTCTTTCTTGTGCCGACTTGCGTTACTACGCAATGGCAAACTTTTATCAAAGTGAATGCTCCAGAGGGAAAGCCAGAAGATTACGTAGTTTACAGCAAGTTTCCTCTGCCTGCGACTGGAGAAGAATACAGGCTATTCTACGCACAGAGAGGAGATGCACTCGACAAAGTTGGACTTTTTAAGGTCTCACCTTCAGGTATAATAACTACCGCTCAACCGCTAATTTACGAGAAGGGAAAACCAAACGAATATGACTTAACGATTGTAAAGAAACCAAAAGAGGCTAAAAATGGTGGATTAGCAGCCACAGTGCGAGTCAAAGTCCAGGACGTCAATAATTTTCCTCCATTGTTCACTTTTGCGTTGTATAACGGAACCATTAGAGAAAATTCACCTGTGAATACGATAGTCATGGGCTTGGAGAATTGCCACGCCGCAGAAAGAGATACATCGGAAATACGAGACTATAGGATTGTTAAAGGTAACGAGAAAGGCTATTTAAAGGCGGAAAAACGAGTTGTGGGAAAGAAGAGCTTCTTACAGCTGAAAGCGACTGGAAATCCCATCAGGCGAGACAAAACCGGCCCGGTAATGACGCTGACTGTGGAGGCTGAAGACATGGGCATCCCACCATTAACTGCACAAACGTTGGTCAGAGTAAGGATTGAAGAAGTAAATGACTATTCGCCTGTCTTTGATAAAAGAAACTACGAGTGGACAATAGGCGAGGACACTCCAAAGATGATGTCAATACTAAGAGTTCAAGCCACAGATAAAGATGATGGGGTTAGTGGAGAGGTTTATTATTTCTTTCAAACTCTGTCGAGATTTTTCTCGATCAATGCATTTACAGGGGTAATAACATTAGTGCGCGAGCTGGACTACTCCAAAAGCAACCAACGCTCGCATCGGTTGACTGTTGTAGCTCGCGATGATGGGAATCCCAGTAGAGAAGCCTCAGCCACCGTTATCATCACTGTAGCGAAAGATCTCCCAAACTTTCCACTCGCACGTTCCTCCATCTCTCCTCTTGACAATACAGCACCGTCTTTCCCAAAGGCAGCATATCACTTCACACTTCGCACGTCATTTCCAGTCAAGGGAAGTCTTGGTGCTGTCTTTGCTGTTGACATGGATCCCCCCGGCCCTGATAGTGATCTGCGTTACTCACTTATCAGTGCTTCGGATAAATTCAATATTGATGAAATCAGTGCGGTGTTAACAGTGAGTAACAAGCTGGATGTACAAACGTACACTCTTACGGTCAAAGTCCAAGACCAGGGAAACCCTCCCAAACAAGCACAAGCCCAAATCAAGATTGACGTCGACGATTTCGATTATTCTCACACTTACCCGATCTTCACCGACCCTATACAAGAAATAAAAGTTGCGGAGAACACAGCGGTTGGGACATCTGTATTTCAGGCAGTCGTCAAATCCGACGCTAGCACCAGTAAGGGTGTCGTGTATTCAGCAATTTCCGGCTCTGGACTTCCGTACTTTGAAGTGGACGAAGCCACAGGTGTTATGAAAATTGCCTCGCCTTTAGACAGAGAAACACACGCAGTCTATGACATGCTCATAGAGGTGCGAAATAAAGAAAAAATGCCACGCCACTCTTATCTTTACCTCACCATTGACATCACAAACGTAGACGATGCTTATCCAGACTTCACTAGAGCAGCTGATGAGGCAATAGTGCCCGAGGGGAGTCCTAAAGGGACCTTTGTCACTGTAATTCACGCTATAGATAAAGATGACCCGGTAGTGACATACAGAATATCAAGCTCTTCTGTGCCATTCGAGATTGAATCAAACACGGGTGTAATAAGAACAAAGCGAACCTTCGACCGAGTATTGGGCGATGATGAATTTCTCATTTATGTTGAAGCCAGTGACGGAAACGGTAAATCCTCGGAAACGCTTGTCAAAGTTAATGTCACCAGTGGGTTCAACTCCGCCCCTAAATTTCAAAAAAAATCTTTTGACCTATCTATGAAAGAAGGGCAGGGCTTGGTGCCGAACTTATTGTGCATCGCTGCGACCGGAAGCAATGGTGCAGTGAAATATTCAATGAAATCAGGTGGAGATGAAAGATTTCAAGTTGACCAGAATTCTGGTTCGTTTTCCGTGACGGATTCGTTCAACTTCGTTTCGGAGCGGGGTTTTGTTGTTCAAGTGGAAGCAAAGAGCGAGAGCTCTTCCCAAGTAGCTTCGGCATCAGTTAGAGTGGCCATTGAAAATGATGATGGTCCGCCCCCCTTCTTAAAAAATAATTTTGCCATTACAACTCAAGAGAATGTTGCTGTAGGAACGAAACTTCTTGTTGATGGTAACGGTGGGTTTCGCTTTTCGACCGATGAAAATCCTGTTTCAGATTTTGAGTGCACTCTGGAGGACATCACCACCGTGGCAATTATTAGCCATTTCAAAGTCCAGCGAACCAATTCGGAATGTCATCTAGAAGTGATAAAGAACTTTGTTCAAATCCTAGACCGAGAATTCAACTTTGATGTACGCGTTACAAATGTCAAACAACGCAATTTATTCGGCTCAGCTCGAGTAGCAGTGAAAGTCTCTGAAACCAATGACTTCCCTCCTAAATTTGAGCAGTCGTCCTACTGGGTAAGTGTACCGACCAGTACCCCCACGGGAACAAGCTTAGTTCAAGTTTCTGCTTTGGACCCGGATACTCAAGAGAGGTCTAACCTTGTCTTCGATCTGCTTTCGGAAGGTGCACCGGACGATCTAAGCAGGTTTCAGCTGGATAGTGAGGGCGTGTTTCGAACGACTTCGTCTTATTTACGGTCAAACACATTGTACAACTTCAAGGTCAAGGCTCGAGAAACAGGAACGGATCAACCCAAGGAGAGTGAAGTTTCCCTCAAGGTATCCGTGTTAAGTGTTCCTTTTGTTCCCTTGGCTTTTGAAGCTCCAAGTTATTTCAAGACTTTGGCTGAAGATGTCGCAGTATCAACAGCTGTGTTTAAAGTTAAGGCTTCTCGCTCTGAAGGAGACAAACCTATTCAGTATTCTATTGTTGGAGGAAATGCGCGCAGACAATGTATTCACTATCGATTCAAACAGCGGACAAGTTGCTTTGGCAAAGAAACTTGA

Transcript

Protein

Uniprot

Uniprot term	Description
B8V7Q1	Protocadherin-like protein OS=Acropora millepora OX=45264 PE=1 SV=1
Q9VW71	Fat-like cadherin-related tumor suppressor homolog OS=Drosophila melanogaster OX=7227 GN=kug PE=2 SV=3
Q14517	Protocadherin Fat 1 OS=Homo sapiens OX=9606 GN=FAT1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028	Cadherin	Cadherin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002126	Domain	Cadherin-like	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR039808	Family	Cadherin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24027	CADHERIN-23	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016342	Cellular Component	catenin complex	Interproscan
GO:0045296	Molecular Function	cadherin binding	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan
GO:0098742	Biological Process	cell-cell adhesion via plasma-membrane adhesion molecules	Interproscan