Genomic Location: NC_064045.1:4482295...4492455
NR annotation: XP_048575579.1, trinucleotide repeat-containing gene 6A protein isoform X3 [Nematostella vectensis]
| CDS | |||||
| LOC5509622 | |||||
| Transcript |
| rna-XM_048719622.1 |
| Protein |
| XP_048575579.1 |
| Uniprot term | Description | ||||
|---|---|---|---|---|---|
| Q3UHK8 | Trinucleotide repeat-containing gene 6A protein OS=Mus musculus OX=10090 GN=Tnrc6a PE=1 SV=2 | ||||
| Q8NDV7 | Trinucleotide repeat-containing gene 6A protein OS=Homo sapiens OX=9606 GN=TNRC6A PE=1 SV=2 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | UBD|Alpha-Helix|UBA |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00627 | UBA | UBA/TS-N domain | Domain | Interproscan |
| PF00076 | RRM_1 | RNA recognition motif | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009060 | Homologous_superfamily | UBA-like superfamily | Interproscan |
| IPR035979 | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR041917 | Domain | Trinucleotide repeat-containing gene 6C protein, UBA domain | Interproscan |
| IPR000504 | Domain | RNA recognition motif domain | Interproscan |
| IPR015940 | Domain | Ubiquitin-associated domain | Interproscan |
| IPR012677 | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR052068 | Family | GW182 domain-containing protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13020 | TRINUCLEOTIDE REPEAT-CONTAINING GENE 6 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0000932 | Cellular Component | P-body | Interproscan |
| GO:0005654 | Cellular Component | nucleoplasm | Interproscan |
| GO:0035195 | Biological Process | miRNA-mediated post-transcriptional gene silencing | Interproscan |
| GO:0060213 | Biological Process | positive regulation of nuclear-transcribed mRNA poly(A) tail shortening | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K18412 | TNRC6, GW182; trinucleotide repeat-containing gene 6 protein | - | Chromosome and associated proteins | ko03036 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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