Gene detail

Detailed information of XP_048575631.1 in Nematostella vectensis

Genomic Location: NC_064045.1:6531543...6547296
NR annotation: XP_032235101.2, mitochondrial Rho GTPase 1-A isoform X1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_048719674.1

AGAGTAGAGACTGGTACCCACTCGGCGGCAAAGAGCGGCAAACATGGAGTCTGTAAAATGACCAGCCAAAATGCTGGATTTTTGCGTCCAGAACTCGATTATTTTCTAATTTAGTCAGCCTAACATCTCACCCAGGCATAGAAGAAGTCGAAGCTCGCGTCACTTTGTCCATCACTGTGTTAGTCCTTGCAGAATATATTCTTTTCGAACCGCAGACTTCGAAATTCAAAATGTCGACGCGAGATGTTCGTATTTTGCTTGTTGGGGATTCTCAAGTAGGAAAGACGTCGCTTATACTGTCACTTGTAAGCGAAGAGTTCCCAGATGAGGTGCCTATGAGGGCTGAAGAAATCACCATTCCTGCCGATGTAACACCTGAGAAAGTGCCAACTCACATTGTAGACTATTGTGAGGATGAACAGACAGATGATATACTTGCAGATGAGATTGTGAAGGCCAATGTTGTCTGCATAGTCTATGATGTCACAGATGAAGAGACTATAGAGAGGATAACAACCTTCTGGCTGCCACTGATTCGAAGTGTCACTGAAGATGAGGAACATATTAAACCTGTCGTCATCGTTGGTAATAAGtCTGATCTATCTGATACTAGTACAATGGATATTGTTCTCCCTATAATGAATGACTACTCAGAAGTTGAGACTTGTGTTGAGTGCTCAGCCaagaatttgaaaaatatctCTGAGATGTTCTACTATGCCCAGAAGGCAGTGCTTCACCCGACAGCGCCATTGTATTCTCCTGATACCAAACAGATAAAGCCTTTATGTGAGATGGCACTTACAAGAATATTTAAGATATCAGATGCTGATGGGGATGGCATTTTGAATGACACAGAACTTAATAGCTTTCAGAAGAGATGTTTTAATTCGCCACTTCAAGGGCAAGGTCTACAAGATGTGAAGAACGTTGttagaaaaaatatagaagGAGGTATCAGAAATGGAGGCCTTACCCTAAAAGGCTTTGTGTTTCTACACACGCTTTTTATCCAAAGGGGCAGGCATGAGACCACATGGGCGGTGCTTAGAAAATTTGGATATGGAGAGGATCTACAGCTAAGGTCTGACTACCTCTGTCCAAAAGGTATTGACGTAGGCACAGACAGTACAGTGGAGCTATCTGATGCTGGTTATGAGTTTCTTATTGATCTGTTCAACAAATACGACAAGgatcAAGATGAAGCTTTGAGTCCTGTAGAGTTAGAGGAACTGTTTGAGATGTGTCCCACAAATCCATGGGGCGATGAAGTGATACATGCTGCTGAGACCAACAGTAAGGGATGGATAACCCTACAGGGGTTTCTAGCTCAGTGGACACTGACTACCTTTTTGGACTACACTCGCACCCTGGCCTATCTGGCTTACTTTGGCTATGCACATGGTGAAGTGGAGACCCAACTATCAACAGCAATAGCAGTCTGTCTTCCTCTACCAGTTCCTATCACTATCTCTGTCTCGCGACTTATTCAGATGAGGAAGAGGTTTCGCGTCTCTCAGAGCATTCACAGCGGACTTGACTGGGCCGTGGCACAATGGGtcactagaagcaaatcCATTGATATCCAGAAGAAGTCGACCACTAGATCGGTATTCCAGTGCTATGTCTTTGGACCACCAGGAGTGGGAAAGACAACATTTTTACAGTCGTTTCTTGACCGATCCCTTGAAAATTCGGACCTCGAGCATCTTACCACGCCGTATGTTATCAATCTTGTAGAAGtacaaagacaagagaaaTATCTAGTGTTACGCGAGATCGAGTGGGAGAATTCAGGGCTTCTGCTACATGATAGGAGATGTGACGTGGCTTGCTTCTTGTACAACTCAAATGATGCGGCTTCATTTTCGCAGATTGTACAACTCAGAGAGAAGTTACCAAAGACTCTACCGTGTTTATTCGTCGCAACAAAGAGTGACCTAACGACAGTGAAACAGGAATATGAGCAACAGCCTCTGATGTATACGACGCTGAATAAACTtccaccaccacagCCGTTCTCCATAAATGGACCGCCAGAGggcaacaaaaaaatatattccaaACTTGCGCAAATGGCTGTGTACCCGTGA

Protein

Uniprot

Uniprot term	Description
Q6NVC5	Mitochondrial Rho GTPase 1-A OS=Danio rerio OX=7955 GN=rhot1a PE=2 SV=1
Q2HJF8	Mitochondrial Rho GTPase 1 OS=Bos taurus OX=9913 GN=RHOT1 PE=2 SV=1
Q8IXI2	Mitochondrial Rho GTPase 1 OS=Homo sapiens OX=9606 GN=RHOT1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan
PF08355	EF_assoc_1	EF hand associated	Family	Interproscan
PF08356	EF_assoc_2	EF hand associated	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001806	Family	Small GTPase	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR020860	Domain	MIRO domain	Interproscan
IPR013566	Domain	Mitochondrial Rho GTPase 1/3, EF hand associated, type-1	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR013567	Domain	EF hand associated, type-2	Interproscan
IPR021181	Family	Mitochondrial Rho GTPase	Interproscan
IPR003578	Family	Small GTPase Rho	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24072	RHO FAMILY GTPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005741	Cellular Component	mitochondrial outer membrane	Interproscan
GO:0007005	Biological Process	mitochondrion organization	Interproscan
GO:0006897	Biological Process	endocytosis	Interproscan
GO:0007163	Biological Process	establishment or maintenance of cell polarity	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0019901	Molecular Function	protein kinase binding	Interproscan
GO:0032488	Biological Process	Cdc42 protein signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07870	RHOT1, ARHT1; mitochondrial Rho GTPase 1	EC:3.6.5.-	GTP-binding proteins	ko04031	deepkoala