Gene detail

Detailed information of XP_048575669.1 in Nematostella vectensis

Genomic Location: NC_064045.1:7207388...7226789
NR annotation: XP_048575669.1, medium-chain acyl-CoA ligase ACSF2, mitochondrial [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_048719712.1

gcgctTCATGTTTTGTCACtcgaatccaagatggcggccacgaaCTACGATTTCGAGATTTCGAAGGTTTTTAtcgccgaaaacagcatctaaagcctacaggtaggctacgGCTCCTAGTTTTTCCCTTCGCCTTCTGTATATAGAAGAGACAAGGTTGCAAATTCCGACAAACGCCAAATTCCAAAGTGCTCAACAAATCCACCGATCCTTTCGAAATCCAGACTCgcacggcaaaaaaaaaaaaaaaaaaaaaaaaaactcgcaAAATCATAGCACACATATTTATCTTTCAACCATTCCTTTTAATCGTCTATTCGTCCCCGTTTAGCTGTTTGAACCGCGAGAATCTTTCTTTTGAATTTCATCGGCTGTCGGTTTTAAATTGGCTTAAAGTTGTGCCGTGTCACGCGCCCAGAACCAGTCTTACTAGGAAACTTATTCAGCGGCTCTTCTGCGGTAGTGACCTAGGAGCGCCCACGAAATACGCTGACGTGTCGGTTCATGTTTTTgaaatattgtattgtattgcatTCCTGAAAATCTATGACGTCACCGCACTGTAGGTGATAGGGTCACGATAGACTATAACCTATAGTCAAGATAGACTGGCCCGTAAAGGTTTTTACGACAAAAAACTACTCAAGGTGCGTATCCTTATTCAAGGTCATGCTGTCAAAGAAAATGAGCTATCTGCACCACCCCCACACCACCCCCATGGAGCACAAGACCCTTTTTCAGCTCCTTGACCGCCACACCGCCGaatgtccaaataaggaaGCACTGGTTTACCGAGATGAAAAAGGCAACCGGAAGTCACTTACCTTCAAAGAGTACAAAGATCAGTCCCAGGCTATCGCAGCCAGACTCTTGGAGCTAGGCGTGGGTCGTGGGGACATGGTGCTAGTCATGCTGCCCAGTGAGTTCGAATTTGCGATTGTCGAGATCGCTCTAGGGCGAATTGGCGCAATTTTTGTAGCAGTAGAATTCGATGCCCCTGAAGCTGTAACAATATTACAAGATCAAATTCACTGCATATTTTACTCCCATGAGAGCAAGGAAATGCAAGAAGTCGTAAGCGTTATTGTGGATCGAGATCACTTCAAGGCCGCGGTCTATGTCGGTCCCCACACTACCCCCCCAAACAAACCAAAAGTCTACAGCTATAGCGATCTCCTGGAAGCAAGCGAACCGTACGATCTCGCTGCCTTGGCCCAGGTTGAGGCAGAAATTCAGTTTGATGACCCGTTTTTGATCATTCACTCTTCCGGAAGCACAGGGAAACCAAAGCCTGCACTCTACACCCATCAGGGATTCGTCAATGGAGTGAAAATAATAAGCCTCGTCTTCAAGGCGACACGGGAATCCATCGTGTTTAGCGATTCTCCGCTGGACTGGATCCCGGGCGTCGGGTTTATGCTTGGTTTGGTTCCGTTCTGCGGCGCAACTCTTGTCATGTTCCCGCCAAATCTTGCCGTACACGGCCACGTGACTGGTTCTATTCTTCACATAGTCGAAGATGAAAAATGCACCCATTCCCATTTTCTGTCCTATTTTTTTGTCGACATGACGCTGTATTCAGAAATATCAAACGTGGACTTAAGCAGGCTGAGGTTCTGCCTTACTGGAGGACAGCTAATGGACAAGAATCTGATGAAGAAAGTCTTCGATATTGTGCCCGACCTTTGTATCTTTGTTGGTTACGGCGCTACAGAGGCGTTTCTTGTCGCCAGGCAGCCGCTTACAAAGGACAATATTGACTCCGTCAACTATGCTGCTTTGGAATTAAACCCTGGGCTGGAGATTAAGGTGGTGGACAGTAATGAGAACGTCGTGCCTGTTGGAACTCCAGGCGAGCTGTATGTGAGAGGGCTCTCAATGATGCACTCCGCGAACGCTCTGAAAATCGAAGGAGCGGACTACAGGGACTGCTTCACGGACACAAGGTGGTACCGGACAAACGACCGCTGCCTTCTCACGCCAGATGGAAAACTAAAGATTCTTGGGAGAATCGATAACCTCATCAAATGCGCCACAGAATCCATTCAACCCGTCGAAGTTGAAACTGTCCTCTCCAAGCATCCCAAAGTCATCAGCGCCATCGCTGTCGGTGTACCAGACCAGCGGCTGTATGAGACCGTCTGCGCATGTGTGAAGCTCGGACTTGATAAAGGCGAGACCGAGGAGTCAGTAGTTGCTGAGATCGACGCCTGGTGCGCGGATAAGTTTATCGTTAGCACTAACGGTCTATCGTCACAACCTGTCCACTACGTTGTGATGGATCAGTTCCCTACTACAAGAACGGGTAAAACGGATAGAAAAACCTTGAGAAAAATGGCTATAGAAAAACTTGGTATCGCATGAGCATGGACGCAGTTAGAGAGTGTCTAATAATTTCGGTGAGAACCTTCCAAGCGTGTATCGTTAACCTGCCGAGCTTGTATCGGGAACCTTCCAGGCTTGTATCGTGACCCTTCCAGGCGTGTTTATCGTGACCCTTCCACGCGTGTATCGTGACCCTTCCAAGCGTGTATCGTGAACCTTGACGTAGATTTAGCGTTTATCGTGAACACTCTAAGCGTGTATCGTGAACCTTCTAAGCGTGTATCGTGAACCTTCTAGGCGTGTATTGTGAACCTTAGCGTGTTTCGTGAACCCTCCAAGCGTGTATCGTGAACCTTCCAGGCGTGTATCGTGAACCTTCTAAGCGTATATCGTGAACCTTCCAAGCGTGTTTCGTGAACCCTCCAAGCGTGTATCGTGACCCTTCCAGGCTTGTATCGTGACCCTTCCAGGCGTGTTTATCGTGACCCTTCCACGCGTGTATCGTGACCCTTCCAAGCGTGTATCGTGAACCTTGAAAGCGTAGATTTTGAACCCTTCAAGCGTGTATCGTTAACCTTCCAAGCGTGTATCGTGAACTTTCCAAGCGTGTATCGTGAACCTTCCAAGCGTGTTTCGTAAACCTTCCATGTAGCCATGCGAAGGTTAATTCTCTTTCATCATACATAATGATATGTATGTtcattacatttgtgggtgacATTATTACAATTATGGGTTTATTACACTCGTTGGCACATTCTTATTACAATTATTAAATTTGTGggcatttattaca

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q70LM6	Linear gramicidin synthase subunit B OS=Brevibacillus parabrevis OX=54914 GN=lgrB PE=1 SV=1
Q9CMW1	Acetyl-coenzyme A synthetase OS=Pasteurella multocida (strain Pm70) OX=272843 GN=acsA PE=3 SV=1
Q84P26	4-coumarate--CoA ligase-like 8 OS=Arabidopsis thaliana OX=3702 GN=4CLL8 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002956 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00501 all species →	AMP-binding	AMP-binding enzyme	Family	Interproscan
PF13193 all species →	AMP-binding_C	AMP-binding enzyme C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000873 all species →	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR020845 all species →	Conserved_site	AMP-binding, conserved site	Interproscan
IPR042099 all species →	Homologous_superfamily	ANL, N-terminal domain	Interproscan
IPR025110 all species →	Domain	AMP-binding enzyme, C-terminal domain	Interproscan
IPR045851 all species →	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42814 all species →	AMP-BINDING DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for XP_048575669.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_048575669.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.