Gene detail

Detailed information of XP_048576743.1 in Nematostella vectensis

Genomic Location: NC_064046.1:1536715...1545398
NR annotation: XP_048576743.1, 15-hydroxyprostaglandin dehydrogenase [NAD(+)] isoform X3 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_048720786.1

GAGAGTGCTCTAGGACACCAtaaagtctattggggcataattgatgctgtgcttatggatgtttgcacgctgaggttagATACACCTTTCTcataatttttgtttgttaagCGTTGCcttttttagcaaaaatgtCTAATATGTTTTCTCTCTTCATAGCAAACATAAGTTCGCCTTTCCTTATCCCTTGGTGGCCATCGTATGAAAAGCTTTTCTTTATGGAAACTGTTGGTAGACATTGCCTTATTTAATCCTTTTTTATGCAAATGGAGGGTAATACTTaaacctttattgacggtatTGTTTCGTCACAAAAGACAAGAAGAAGTTTGTTTGTATAAACTCGCTTTAGTTCGAGTTAGAGTCGAACGCTTTCTCCTCACGTCTTCTCAGTCAGCTTCTCATAAGTGTCATTGTCTAAAGGATGAGGATAGAAGGGAGTGTTGCGTTGGTTACAGGAGCCGCTTCAGGTATCGGGAGAAGTGTCTGTGAGAAATTGCTCGAACTCGGAGCCAAGGCTTATGCGAGGCCGCACCTGTGAGAATCTAACAAGGGTCTAGTTCCAAGAAAGTCAGAGAGTTATCGCTAAGATCCTTATCAAGCCCTTATTTAAAACTGACCCTTTATCCACGAACGGCAACCTGTCTGGTTTTCTAGACAAGTCGATGGTTCAAAACCTTTCCGTAACAATACCATCCTCATGGTTGTTTTTGGTCGTTTTTGCAAGCGCCATTCAGATCTGTTATGGCtcggtgggggggggggggggggggggtaggggtttTCCAGTAGACGGGGGTTATAGTcccatcttttagggtataggCAATTTAGACCAACCGCCATCCTTTAGGGGGTGTTAAatgatttttccgattttgccatctcttagggtataaaattcgaccaactgctgTTCCAAAGGAGATATTTAACGTTTTTTCTCCGATTCTGtaatctcttagggtataaaattcaattgctattcctaagggggaCGTTTTTTTTACGATCCTtccatctcttaggggtaaagAAGTGGCATCCCTTGCGGTTAAAATCGATTCTGCCGAAGATCACCCCGTCTGGTTTTATCAGAGTgccgcccccctcccccaccccggGTGGCATGGGCAAAGACAGGCCCCCTTCGTCATCCAACCATCGTCTACGCTGTCTGCATGTTGATCTTTTCCCCGTCGTGCTAGTGGATCTGCAAAAGAAAGCCGGAAATGACGTCACGTGTCTACTACAGAATAAACATGGCAGTGGGTCCGTCTCGTTCATTTCCTGCGACGTGTCAAATCAAGACCAGTTGAAAGATGCCTTCTGGGAGACTGTATCCACACACGGACATCTGGATATCGTATTCAACAACGCGGGGATTTTAGATGAGGAGCGATGGAGCAAGACCCTGGACGTTAACTTGGTGAGACTTTACCTACACCCGAcaaggGGAGCTGTTGTCCACGGGACGCTTCTTGGAATCGAGCACATGTCGGAGGGAGGAGTCATTATCAATACTTCATCTACGGGAGGCCTTCATCCCGCGTCTTTCTGCCCGGTCTATTGTGCCTCCAAGTTTGGTGTTGTTGGATTTACACGAAGTATAGCTCCGTCTGCTCTACAAAAGAAGGGGATAAGAGTGAACTGCGTGTGTCCTGGGAGCACTGATACAAAGATATTCGATGCTATGGTGGTGGACTTATCCGAAAAACAAAAGGAGCTGAGAGACAATCTCCCGAGGCAATCACCCGAAGAAGTCGCTAAAGCAGTCATCAGCTTGATCAAAGATGACACGGATAACGGACAGGTTGTCAAGGTTACCTATGAACATGGACCTGAGTACATCGACTACCAAGATGTTGTTGTTTGACAAGATTCTTTAGACGACGCGAGCTTCTATTATAACACTCTACAattttatagAGGTTGATAGAATGGTCTTCAATCCGACAAAAATGCCTGGCTAGAAATATGTATTGATAGAATATCTTTGTAAAATATTCAAGCCATGCCATGTCTTGTAAAACAAACGGTCTTTATTTCTATACTGTTGTGATGTCAGAGCTTTCCCATATTTGCTTGTTTATTATTCGTATTTGTTTGTCGTTCATAACGTTTTATGCAATAAAATGTCAAACGTTTAGCACTTA

Protein

Uniprot

Uniprot term	Description
Q8MJY8	15-hydroxyprostaglandin dehydrogenase [NAD(+)] OS=Macaca fascicularis OX=9541 GN=HPGD PE=2 SV=1
Q8VCC1	15-hydroxyprostaglandin dehydrogenase [NAD(+)] OS=Mus musculus OX=10090 GN=Hpgd PE=1 SV=1
P70684	15-hydroxyprostaglandin dehydrogenase [NAD(+)] OS=Cavia porcellus OX=10141 GN=HPGD PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002347	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR020904	Conserved_site	Short-chain dehydrogenase/reductase, conserved site	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44229	15-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)]	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan