Gene detail

Detailed information of XP_048577212.1 in Nematostella vectensis

Genomic Location: NC_064046.1:14614631...14619689
NR annotation: XP_048577211.1, glutamate receptor ionotropic, NMDA 1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_048721255.1

ATGTATTCTCATAGTGGCTGGCAACTCCTCATCAAAGTCGGTTCGTTTAAGTATTCACTAAGATGCGAATTACTTAATGTACTTTTTAAAGATGTTGGTAGACGTCGTTAAAAGGCTGAAATTCTAACTAGTTAAATTAGTTTTCTTTGAGTACTCAACATTTCAGAAAGATGTACTCTGTTCACCTTATGTTGATAATGTCTGCATCAGCAAGTCTTGTAAAGAATGGGGCACCGTTTGTGTTGATTATTGCAAATCAGTCGGTTAGAAATGACAAGGAAGTGGTTTTTCACCTTGAAAATGAAGCTAACGTGGAATGGTTTCTAAAAACGAACGCTAGTTTGGATGAGATAACTACGGAATTATGGAGTGATGAAATGGCAAGACAAGCCCAAATCATAATTGGATGTTTAGGGAACGTTCTAGAGAAGCAGGTAGTGTCGTTTGCTCGCTATCATAACATCCCGTTTGTATGTATGGAACCATCCAACCAATTGACACAGGGCCAACCATTCATGGAAATTGGACAATCGCCATTATCAACTGCCGAAAGTATTTACTTGGTTGCCAAGGAAACGTTAGCTAGTCATGTAATTTTCCTTGGCTCACAGGAACAGACGGCAGACATTTTGCCTGTGTTGATGTTACGAGATAATTCGCGACTTTTCAAGGAGAAAGAAAAGCTATTCACATTTGCAGGAATTGACGAGTTGTCAAGGTTATCAACGAAGATTGAACAGCAGAGAAGTGAGATGAGGGTATCTGCGTTCACAGGGAAGAGAATTGATACTATTACTGTTGTAATCGCTATATTGGCCGATTTGTCCATCCCCATGAATGGATCCGTGTGGAACTCCACATGTGACCTGTTCCCGACGACACAAACGTATTGGCTCGTGTTTAATCACGGAAACTGGAGAAGTATTGAGGATGTTGGGATTTCTGATTTAAAGAAAAGACACCAACTTCTACTTGTGGACTTCCCTCACTACAACGACCCGTCCGTTCTAGTggatgttttcctttttattaaacGCACCCTACGTACGAGTCCTGCAAAACCGAATGCGACACGCACAATCAACTGTCCCGAAACATATTCCAATGCCTCGTTATTTTACAGGTAAGACGAAAAACAACTTTAATGGTACAGAAGTTAAACTTTATTTGCTAAATCTCATAGGGATCTCATTGCGCTTTAGGTACTATATAATCTATGGCGTTGCTGTTACCACTTAATCATGGACAATTTCTGTGCATTTGAATAGGTTTAGTGACCAAGGCCAGGTTTTGTTCTTAGAATGGTTTTGAAATGGTTTATCAGGCTTCTTATAGCTCTACGTCTAGTTATACGAAATATCAGGTCAATCTTATCTTTTGATGCACAGAAATCTCGAGGCAACTCTAAAGGAATACAAATACGGAAAAACAACTTGTAACATCCGAAGACTAATGCGTAAAAATTCTTCAAATGTCGCGACGATAAAAGATGGCAAGCTTTTTCCTTTTGATAACTCTATGCGCCCGAACCTACTATGCAAAGACCCAGCAGCAATATGCGTAACGCTAATACCATCAGACCCTGTGACACTCGTTGGGGAAGATGTAGTTACATCCCAGGCTGACTGCACTCTGGGACACATTTGCACTCAGTATGAACCAGTTAACGCTTCAGATCCCACAAAAGGCAAGAGACCAGTCCTGCACTGTTGCTATGGTTTCTCGATTGACCTACTAGTCTACTTGGAGCGCGACCTTGGTGTCCAATTTGAGATGTATATTGTACAGGATCCCTCAAGCTGGAATAATCTTGTCGGTGAGGTTGTACTAGGTAGGGCCGACTTGGCCGCAGCTCCCATTGCCATTACAAACGCACGTCTTAAAGACGTCGAGTACGCTTCTCCTATTCAACAACTTGAGATATACATTGTTATGTCACAGAATCGAGCAAAGATTTCCTTAGACTGGCTGGCGTTTATCAGGCCATTTGACAATAGCCTTTGGTTTGTCATTTTCGGTCTTAGTTTTGCGTTGGTGTTCTATATCTGGTGGATGGATCAGTGGAGCCCTTATGGGCGGGACAACAAGAAGATCCTCTCTGATCCTAGTAACTTTACCCTCCCCGTTAGCTTCTCCTACGTCTTCAGCTCCGTCTTCAAGATCAACctggatgacgtcacagcgcGGAGTCCAAGCGCAAGGTTCACTTACGCTGTGTTCTCCTTTGGCACGCTGATAATGGTGTCTTCGTACACCGCGAACTTGACGGCTTCTCTTGTTCAAGAGCTCCAAACCTTCCCAATAAGTGGAATCTACGATGAGAAGTTTCAGGATCCAAATTCAGGGTTCACGTTTGCTACAGAAAAAGGGGCAAGTGTCGAATTTCTCCTGAAAAGATCCGCGAATCCTGCCTTAACTAGTGTGGGCAAGAACATGATTTACAGTGGTGTCAATACTGACAATCTAGAGCTTCTACACACTGGGAAACTCGATGCCTACATATACTACACACCTTATATTGGTCACATGGCTTCCAAGAAAACAGGCGCCAAGTTCAAACTCGTCGGGAAAAGAATTCACTCCGAAGCTTCGAGCTTTGCATTTCAGAAGGGCTCCCCTTGGATTGCTAATATTTCCAGTCAATTCAGGAAGTATGCTAGCCAAGAATATTTTAAAGAGACGGAGAAAAAGTGGTTTAACAGTCTGGACCAAGACGTCGTTTTACAAGCTGAAGAAATAACTCTTCTCCATTTTCGCGgactctttctctctctcccAGTAGCTACAGGGTTAAGTATTTTGGTTCTCGTATTAGAAAAATATGTGTATCGAAGGTCAACAAGAAAAGTTAGACGAATCCAGGTTAAAGGTGCCGGTGACGGAATGCAACAGCCAGGCCATTCTGAGTCAAATATCAATGAGAAAGTGTTGTCAATAACCTAAGTTGTCAAGAGATGTTTGTAATAACATATTACACATAGGATATGCTTAGACAA

Protein

Uniprot

Uniprot term	Description
A0A1L8F5J9	Glutamate receptor ionotropic, NMDA 1 OS=Xenopus laevis OX=8355 GN=grin1 PE=1 SV=1
Q9Z2W9	Glutamate receptor 3 OS=Mus musculus OX=10090 GN=Gria3 PE=1 SV=2
P23818	Glutamate receptor 1 OS=Mus musculus OX=10090 GN=Gria1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10613	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan
PF00497	SBP_bac_3	Bacterial extracellular solute-binding proteins, family 3	Domain	Interproscan
PF00060	Lig_chan	Ligand-gated ion channel	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019594	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan
IPR015683	Family	Ionotropic glutamate receptor	Interproscan
IPR001638	Domain	Solute-binding protein family 3/N-terminal domain of MltF	Interproscan
IPR001320	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18966	IONOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015276	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0008066	Molecular Function	glutamate receptor activity	Interproscan
GO:0035249	Biological Process	synaptic transmission, glutamatergic	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan
GO:0050804	Biological Process	modulation of chemical synaptic transmission	Interproscan
GO:0098839	Cellular Component	postsynaptic density membrane	Interproscan
GO:1904315	Molecular Function	transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential	Interproscan