Gene detail

Detailed information of XP_048577316.1 in Nematostella vectensis

Genomic Location: NC_064047.1:11254473...11261096
NR annotation: XP_048577316.1, serine/arginine repetitive matrix protein 5 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC5513782

ATGTGGGCCAATGGAGAACAGCCCAACCAATGGTGGCCGATGTCTTACGGCTTTCCAAACCCTAACCCAACGCAAGATGCCAGTGCAGACTGGGCGGCGAAGGCGGCGATGTGGGCACAACAGAGGATGGCACAGGAGGAAATGGCCAAACAACACCAGCAGTACTATGCCACAATGCAGACAGCACCACCACCCCTCCCCACAGAGGCGGTGCCTGATGGACCCCCTGGGGAACACCCTGACCTTCCACCTCCCCCTGGGGAAAGTTTTGAAGCTGTTAAACCCAAGGCTGTCAGTGATACAGTTGCTATGACAACAGATAACTTAGAGACTGTTGCTATGGAGGATGATCCTCCTGAGGAGGATACTCTTGTTGAGCCCTCTGTTACAAGGCTGGACTATAACCACGGGCAGCCTGTGATACCAGAGGTTGGTCCTCCCCCACCCCTCCCTGGGATGCAAACATTTGACCATAACCATGGTTACACCCCAGCTCCTGCTGTCCAGCCGTATGGACATGTGCCAGCACAGCGCTTTGATTATGGACACCAGAGCGGCAGTCAGTGGTACGATTACAGTGCCTACCACGGGGAGTATATGGCCATGGAGCAGCCACTCCCAGTCCATCACAAGGAGATGAAGGCTGAACGCCCACAAATGCCATCTGCTATGGATTTCAGTTCAATGTCTGAGGTCAAGAAGAAGGGATTGCCACTATGGATCCGAGAAGGACTGGAGAAGCTGGAAAAACAAAAACAGAAAAAAGAGAACCAAAAAAAGTCCTTGAATTCATCCACTTCGTCACTGACGAATATTGCTGGGTATGACCATGGCAAGTTGTCTTCCCCTGTGCCATCACCCAAGAAAGACGAATCAGACAAGGAGGAAGCAAGCAGTGACGAAGAGCCGCCCAGCCCTCCTCGCCCCAGTCCACACAGACACAAGCATTCCCGCAAGCACCAACACAGCAAGCAAAGCGATAGTGACAGTGAGGATGAACATAGACATAGGTCGTCACGGCGACATCGCCACTCTCGTCACTCTAGATCCCGGTCTTTATCTCCCAAAAGGGTTGACTCTTCTTCTGAAGAAGAAATTTCTAAACCTCTTTCAGAGGAGGAAATGCTTATGAAGGTGCGTCAGATGCTCACTGAAGTCCTGCTGTCTGTAACAAATGAACAACTCCAAGGTATCGCCCAAGAGGCGTATGACGAGACCATGAAAGACCATGTGGCACAAGAGCTGAGGAGCTCAGGGGGCCTTGCAGTGCTACGCGGAGGCCGCGATCTAGGAGTCGCAGACTATGGCGGGTCTGACTCTGAATCTGATAGTGAATCAGAAGAAGAGTCGCCAGAAGAAGAAAAACCCAGACCACACCCCGTAGCAGATGAAGACGAGAGGGCTGACGTAAGGAGGCAGGAGGAAGGCACGCCCCTTAAAAGGCGCTCACGCAGCCGCTCTTTGCGGCACGAGGATCACGACGATGCCACGCCCAGACGCTCTCGCAGCCATTCCTTGCGGCACGAGGATCACGACGATGCCACGCCCAGACGCTCTCGCAGCCATTCCTTGCGGCACGAGGATCACGACGATGCCACGCCCAGACGCTCTCGCAGCCATTCCTTGCGGCACGAGGATCACGACGATGCCACGCCCAGACGCTCTCGCAGCCATTCCTTGCGACATGAGGACGAGGAGGAGAGGTCACCTTCAGGAGGACGCCATGAGCGGGACGACAGCAGAGAACCCTCGTCGGCCGAGGAAAGTAGTCGAACAAGCTCACCCCACAGCCGAAAAAAGAAATCCAGGAAGCATAGGCATAGAAGCCGGAGCTCTAGTCTAAGCTCAAGACGGAGGAGTAAACACAAGCGGAAAAGCAAGCGCGATCGGAGCAGGTCGCGTGATCGATCCTCGAGCAAGTCGAAAAGCTTGCGGAGATCTAAAAAGTACAGTCGTAGCAGGAGTAGATCGAGTGAGCGCAGGCGGCGTAGTAGGAGCCGATCCACCGAACATAGATACCGCAGTAGAAGCCGATCGCCGAGAAGGAAGCACCGACGCAGTACAAGCACCTCGCCCTCCCGTCGGTATAGGTCGGGTAAGAAGGGACATAAAAGACGCTCCCGATCGGCATCAAGGTCACCTTCGCCAAGGCACAAGAGACATTAA

Transcript

rna-XM_048721359.1

ATTGTCCCCCCTCTAGTGATAGCGAGCCACCACGAAATGAGAGATGAGGGAAGACTCAGAAGTCTGTGTCATATTTCTCCCAGGATTTTTTGCCTAAAATTGCTATATTATCAAATTTTTAATCCATATACACTTGTATTGATTGCAAAGGAACTGAAAGCTAGCTGTATGTAAACATGTGGGCCAATGGAGAACAGCCCAACCAATGGTGGCCGATGTCTTACGGCTTTCCAAACCCTAACCCAACGCAAGATGCCAGTGCAGACTGGGCGGCGAAGGCGGCGATGTGGGCACAACAGAGGATGGCACAGGAGGAAATGGCCAAACAACACCAGCAGTACTATGCCACAATGCAGACAgcaccaccacccctccccacagAGGCGGTGCCTGATGGACCCCCTGGGGAACACCCTGACCTTCCACCTCCCCCTGGGGAAAGTTTTGAAGCTGTTAAACCCAAGGCTGTCAGTGATACAGTTGCTATGACAACAGATAACTTAGAGACTGTTGCTATGGAGGATGATCCTCCTGAGGAGGATACTCTTGTTGAGCCCTCTGTTACAAGGCTGGACTATAACCACGGGCAGCCTGTGATACCAGAGGTTGgtcctcccccacccctccctggGATGCAAACATTTGACCATAACCATGGTTACACCCCAGCTCCTGCTGTCCAGCCGTATGGACATGTGCCAGCACAGCGCTTTGATTATGGACACCAGAGCGGCAGTCAGTGGTACGATTACAGTGCCTACCACGGGGAGTATATGGCCATGGAGCAGCCACTCCCAGTCCATCACAAGGAGATGAAGGCTGAACGCCCACAAATGCCATCTGCTATGGATTTCAGTTCAATGTCTGAGGTCAAGAAGAAGGGATTGCCACTATGGATCCGAGAAGGACTGGAGAAgctggaaaaacaaaaacagaaaaaagagaACCAAAAAAAGTCCTTGAATTCATCCACTTCGTCACTGACGAATATTGCTGGGTATGACCATGGCAAGTTGTCTTCCCCTGTGCCATCACCCAAGAAAGACGAATCAGACAAGGAGGAAGCAAGCAGTGACGAAGAGCCGCCCAGCCCTCCTCGCCCCAGTCCACACAGACACAAGCATTCCCGCAAGCACCAACACAGCAAGCAAAGCGATAGTGACAGTGAGGATGAACATAGACATAGGTCGTCACGGCGACATCGCCACTCTCGTCACTCTAGATCCCGGTCTTTATCTCCCAAAAGGGTTGACTCTTCTTCTGAAGAAGAAATTTCTAAACCTCTTTCAGAGGAGGAAATGCTTATGAAGGTGCGTCAGATGCTCACTGAAGTCCTGCTGTCTGTAACAAATGAACAACTCCAAGGTATCGCCCAAGAGGCGTATGACGAGACCATGAAAGACCATGTGGCACAAGAGCTGAGGAGCTCAGGGGGCCTTGCAGTGCTACGCGGAGGCCGCGATCTAGGAGTCGCAGACTATGGCGGGTCTGACTCTGAATCTGATAGTGAATCAGAAGAAGAGTCGCCAGAAGAAGAAAAACCCAGACCACACCCCGTAGCAGATGAAGACGAGAGGGCTGACGTAAGGAGGCAGGAGGAAGGCACGCCCCTTAAAAGGCGCTCACGCAGCCGCTCTTTGCGGCACGAGGATCACGACGATGCCACGCCCAGACGCTCTCGCAGCCATTCCTTGCGGCACGAGGATCACGACGATGCCACGCCCAGACGCTCTCGCAGCCATTCCTTGCGGCACGAGGATCACGACGATGCCACGCCCAGACGCTCTCGCAGCCATTCCTTGCGGCACGAGGATCACGACGATGCCACGCCCAGACGCTCTCGCAGCCATTCCTTGCGACATGAGGACGAGGAGGAGAGGTCACCTTCAGGAGGACGCCATGAGCGGGACGACAGCAGAGAACCCTCGTCGGCCGAGGAAAGTAGTCGAACAAGCTCACCCCACAGCCGAAAAAAGAAATCCAGGAAGCATAGGCATAGAAGCCGGAGCTCTAGTCTAAGCTCAAGACGGAGGAGTAAACACAAGCGGAAAAGCAAGCGCGATCGGAGCAGGTCGCGTGATCGATCCTCGAGCAAGTCGAAAAGCTTGCGGAGATCTAAAAAGTACAGTCGTAGCAGGAGTAGATCGAGTGAGCGCAGGCGGCGTAGTAGGAGCCGATCCACCGAACATAGATACCGCAGTAGAAGCCGATCGCCGAGAAGGAAGCACCGACGCAGTACAAGCACCTCGCCCTCCCGTCGGTATAGGTCGGGTAAGAAGGGACATAAAAGACGCTCCCGATCGGCATCAAGGTCACCTTCGCCAAGGCACAAGAGACATTAACCACTCCGTTACCGAACCATAACAACAAACGTATGCAAGGATGGGTTTTTGCGGTTTTCCTCAATGATTTTATGTCTAGATCGAGACATTTTCTGTCTTTGCTACAATAATTTTAAGATCCAATTTAGGTATTCAATTAGGTATGAATGTATCATAATTCAGATGTTATTTTAAAGACGTCGCAATTCATTCGGCTGTAATAATGAAGAAATAAAGGCTTGCGCCAAACGTGATGATATCTGGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15996	PNISR	Arginine/serine-rich protein PNISR	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031937	Family	PNN-interacting serine/arginine-rich protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31518	ARGININE/SERINE-RICH PROTEIN PNISR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0016607	Cellular Component	nuclear speck	Interproscan
GO:0048786	Cellular Component	presynaptic active zone	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13170	PNISR, SFRS18; arginine/serine-rich protein PNISR	-	Spliceosome	ko03041	deepkoala