Gene detail

Detailed information of XP_048577339.1 in Nematostella vectensis

Genomic Location: NC_064047.1:5370488...5378756
NR annotation: XP_048577339.1, recQ-mediated genome instability protein 1-like [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5502869

ATGGCGGCAAATTCAGCTCGAAATACTTTGCTGTGGTTGAGAGAAAACTACCACGCGAATGTACGTCAGGGCTGGCTTGATGAATGCATAGACTTCATCAAAAGAACAAATAGTGGTCGTTCTATTACTCAGCACCAGTTAAATCAGCTGGTATATGACAAATTCTTATTAGCTGACTTACAAGAAATTGGTGAGGCAAGTTTACCCCAAATCAAGGATGAGGTTATGATGGTAGAAGGAACTTATTGCTTGCAGATTAATTCTGTTATAAATGTTGGACAATCAGCGTATTCACAAATCATGAAAATTAAAGGAAAAGATGACCCTGAAAGCCATTTGGACAAGAAACATACCAATTGGGAACCAAAGGTGAAGGCAAGTCGGATGTTGTTTTTTCAGCTTTCTGATGGTGGGCAGCAAATTCAGGCGATGGAATATCAGCCAATACCTACCTTGCAGGCATTGACACCTCCTGGAACCAAAGTTATCATCCAAGGGCCGATTGCCTGTAGGCTGGGCGTGTTACTTCTGACCAGACAATGTCTTGTACGCATTTTGGGTGGATCCACAGAAAGCCTAGTGGAGACCAACTCAACATGGAATTTACTTCACAGCAGCATAGGGCAAGAACCGCCAGAACCTCCAGCAGTTGTACAAATACTTGAAGATGAGGCAGAGAGCTCATCTTCCAAACCATTAAACAAGAACACTCAAAATGTGTCTATGCAGTCATCAACAAGAAACACCTTTTGTAAAAGTACTGCAAGAAGTTGTCAGAATTTCTTTGAAAACAAACATCAAATGATCACACCTGGTGTAGACTCTAGTATTCGTGCAAACCTTAGAGTTACTGGAAAAATTCCAGGAAATGAAAGGGTGAATAATAACTGGCCAAACACAAGGACATCTATTGGAAAAAGTAAACTGCAGACAACACACTGCAAAAGCCTTCAGAGATGCGATTCCTGGGGAGAAAGAACTGATTATTTTGATGATGATGATAATGAGTTATTAGACGAGGACCTATTTTCTGATGACATAGAAGAGAATTTGGATTTTGATCAATTGGATCAACTTGAGAAAGGAGCTCTACCAATAAGGAATTCTGCATCAGAGAACATTGCAAGTCTTCACCTTCAAGAACTTCAGGATGTGTTTGAGAATATTGATGATCAAGATTTGGATGATTTCGAATTAGATAATACAAATAATGGAAGCATTATACTGTGTGAGAAAACCATTAAGAGAAAAGAAGATAATTCAAGAGTTTGTAGCTTTGGAGTGGACACTGGAATTACTGATTATTCATCGAAGGGAAAATTCCCTATGAAACAAAGGGTTAATACGGAAGATGAAATTTCTGAGCAGGTCTGTAAAAAGCAAAGGCAAGCTTATGCCCCCCCTTTTGGAAACAGTATCAATCCAAAATCAGAAAAACATCCAACTTTTGGAAAAGATAGACAAGGGGTGTTGGAAGGTATGGAGGTGATTGATGTTGATCATCCTGTAATAAAACCCAATGATCAAATAACAAAACTGGACAAGATGGAAAGTATGGGACGTTCTTATTCACTTGAGTCTCTGCCATTTACCTATCTCAAGACTGTGGAGCAGCATCTGCCATTTCAGGAGGATATCACCATCAGGATAAAGGCTTATGTCTCCACCCTTGTAAACCATTCCCAAACACCAGGAACTGGTTGGTGCGTCACTGTCAAGGTGAATGATGGGACAGCAGCGATGGACATGGATCTGGGAGCTGAGGTACTGACAGAGCTTCTTCAGATGCCCGTTGAGAGTTTTCAGAACCTGATGCAGGAAGCGAAAAAATCACCAGACACTGAACTTCGACGCTCGCTACAACAGCACACGGAGCAATTCCAGAGGAACCTGAGCATGGTCACGTGTTTAATGGACGTATCATTTGTATGCACTCGCCCCAGGCCTGTACTAATCCGACTGCGTCAGCCCTCACGTGATGATGTCAAGATGCTCATGTCCAGGATTAGAACCACGTGA

Transcript

rna-XM_048721382.1

ACATTCAATGCCCCATAATGCATTGCAGCCAGATagaaatccaaaatggcggcaaatTCAGCTCGAAATACTTTGCTGTGGTTGAGAGAAAACTACCACGCGAATGTACGTCAGGGCTGGCTTGATGAATGCATAGACTTCATCAAAAGAACAAATAGTGGTCGTTCTATTACTCAGCACCAGTTAAATCAGCTGGTATATGACAAATTCTTATTAGCTGACTTACAAGAAATTGGTGAGGCAAGTTTACCCCAAATCAAGGATGAGGTTATGATGGTAGAAGGAACTTATTGCTTGCAGATTAATTCTGTTATAAATGTTGGACAATCAGCGTATTCACAAATCATGAAAATTAAAGGAAAAGATGACCCTGAAAGCCATTTGGACAAGAAACATACCAATTGGGAACCAAAGGTGAAGGCAAGTCGGATGTTGTTTTTTCAGCTTTCTGATGGTGGGCAGCAAATTCAGGCGATGGAATATCAGCCAATACCTACCTTGCAGGCATTGACACCTCCTGGAACCAAAGTTATCATCCAAGGGCCGATTGCCTGTAGGCTGGGCGTGTTACTTCTGACCAGACAATGTCTTGTACGCATTTTGGGTGGATCCACAGAAAGCCTAGTGGAGACCAACTCAACATGGAATTTACTTCACAGCAGCATAGGGCAAGAACCGCCAGAACCTCCAGCAGTTGTACAAATACTTGAAGATGAGGCAGAGAGCTCATCTTCCAAACCATTAAACAAGAACACTCAAAATGTGTCTATGCAGTCATCAACAAGAAACACCTTTTGTAAAAGTACTGCAAGAAGTTGTCAGAATttctttgaaaacaaacatcAAATGATCACACCTGGTGTAGACTCTAGTATTCGTGCAAACCTTAGAGTTACTGGAAAAATTCCAGGAAATGAAAGGGTGAATAATAACTGGCCAAACACAAGGACATCTATTGGAAAAAGTAAACTGCAGACAACACACTGCAAAAGCCTTCAGAGATGCGATTCCTGGGGAGAAAGAACTGattattttgatgatgatgataatgagtTATTAGACGAGGACCTATTTTCTGATGACATAGAAGAGAATTTGGATTTTGATCAATTGGATCAACTTGAGAAAGGAGCTCTACCAATAAGGAATTCTGCATCAGAGAACATTGCAAGTCTTCACCTTCAAGAACTTCAGGATGTGTTTGAGAATATTGATGATCAAGATTTGGATGATTTCGAATTAGATAATACAAATAATGGAAGCATTATACTGTGTGAGAAAACCATTAAGAGAAAAGAAGATAATTCAAGAGTTTGTAGCTTTGGAGTGGACACTGGAATTACTGATTATTCATCGAAGGGAAAATTCCCTATGAAACAAAGGGTTAATACGGAAGATGAAATTTCTGAGCAGGTCTGTAAAAAGCAAAGGCAAGCTTATGCCCCCCCTTTTGGAAACAGTATCAATCCAAAATCAGAAAAACATCCAACTTTTGGAAAAGatagacaaggggtgttggaAGGTATGGAGGTGATTGATGTTGATCATCCTGTAATAAAACCCAATgatcaaataacaaaactggACAAgatggaaagtatgggacgtTCTTATTCACTTGAGTCTCTGCCATTTACCTATCTCAAGACTGTGGAGCAGCATCTGCCATTTCAGGAGGATATCACCATCAGGATAAAGGCTTATGTCTCCACCCTTGTAAACCATTCCCAAACACCAGGAACTGGTTGGTGCGTCACTGTCAAGGTGAATGATGGGACAGCAGCGATGGACATGGATCTGGGAGCTGAGGTACTGACAGAGCTTCTTCAGATGCCCGTTGAGAGTTTTCAGAACCTGATGCAGGAAGCGAAAAAATCACCAGACACTGAACTTCGACGCTCGCTACAACAGCACACGGAGCAATTCCAGAGGAACCTGAGCATGGTCACGTGTTTAATGGACGTATCATTTGTATGCACTCGCCCCAGGCCTGTACTAATCCGACTGCGTCAGCCCTCACGTGATGATGTCAAGATGCTCATGTCCAGGATTAGAACCACGTGATACCACTCATTTCCCCGATAAGAATCACGTGACACTGCtcgttttattcttttgatcTGATCtggaattctttttttttttcagtcgaATAATTAGGATTTAGAGACTGGCGGTGCCCAGTCATGAATATTTTTCAATATGAAAAGACCGCCTTTTGGTGGGGTAAGAGTGTGTTGGTGTGGTAGGGGGTACATGTGGTCCCTAACCCCACCCCTAACCACGCCTCTACCCCTGTAATGCAAATGTGCACTGAAGGATAAGTGCACTGAATGGGTCCTGGCGAGTACGCCTTTTTTCCGTGTGAGAGTCGACCATTTTGGGTTTTACTCAAGCAAAAAAAGCTTGATACTCTTGACGAGTATCGAATTAGTTGAGAAATATTTGCTTGAGCAATGGAGCACAGGTGAATAGAGCCCTTGTTGTCTCAATTCTCTGTGCGACATGGTTGCAACAATGAAGACAGGAATTTGTCATGTCAGGAACGAGATTAttaaaagccgcattgtcaccgcctcgtacccaggcgtCTCAAGTCTTTAAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H9A7	RecQ-mediated genome instability protein 1 OS=Homo sapiens OX=9606 GN=RMI1 PE=1 SV=3
Q9D4G9	RecQ-mediated genome instability protein 1 OS=Mus musculus OX=10090 GN=Rmi1 PE=2 SV=1
Q7ZVM9	RecQ-mediated genome instability protein 1 OS=Danio rerio OX=7955 GN=rmi1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004252 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21000 all species →	RMI1_N_N	RMI1, N-terminal helical domain	Domain	Interproscan
PF16099 all species →	RMI1_C	Recq-mediated genome instability protein 1, C-terminal OB-fold	Family	Interproscan
PF08585 all species →	RMI1_N_C	RMI1, N-terminal OB-fold domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049363 all species →	Domain	RMI1, N-terminal domain	Interproscan
IPR042470 all species →	Homologous_superfamily	RecQ mediated genome instability protein, N-terminal OB-fold domain superfamily	Interproscan
IPR032199 all species →	Domain	RecQ-mediated genome instability protein 1, C-terminal OB-fold domain	Interproscan
IPR013894 all species →	Domain	RecQ mediated genome instability protein 1, OB-fold domain	Interproscan
IPR044881 all species →	Homologous_superfamily	RecQ-mediated genome instability protein 1, N-terminal helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14790 all species →	RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0000712 all species →	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0016604 all species →	Cellular Component	nuclear body	Interproscan
GO:0031422 all species →	Cellular Component	RecQ family helicase-topoisomerase III complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10990	RMI1, BRAP75; RecQ-mediated genome instability protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.