Gene detail

Detailed information of XP_048577347.1 in Nematostella vectensis

Genomic Location: NC_064047.1:5430487...5438258
NR annotation: XP_048577347.1, recQ-mediated genome instability protein 1 isoform X2 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_048721390.1

TTGCAGCCAGATagaaatccaaaatggcggcaaatTCAGCTCGAAATACTTTGCTGTGGTTGAGAGAAAACTACCACGCGAATGTACGTCAGGGCTGGCTTGATGAATGCATAGACTTCATCAAAAGAACAAATAGTgCAGCTGACTTGCAAGAAATTGGTGAGGCAAGTTTACCCCAAGTCAAGGATGAGGTTATGATGGTAGAAGGAACTTATTGCTTGCAGGGTCGTTCTATTACTCAGCACCAGTTGAATCAGCTGGTATATGACAAATTCTTATTAGCTGACTTGCAAGAAATTGGTGAGATTAATTCTGTTATAAATGTTGGACAATCAGCGTATTCACAAATCATGAAAATTAAAGGGAAAGATGACCCTGAAAGCCATTTGGACAAGAAACATACCAATGTTATCATCCAAGGGCCGATTGCCTGTAGGCTGGGCGTGTTACTTCTGACCAGACAATGTCTTGTATGCATTTTGGGTGGATCCACAGAAAGCCTAGTGGAGACCAACTCAACATGGAATTTACTTCACAGCAGCATAGGGCAAGAACCGCCAGAACCTCCAGCAGTTGTACAAATACTTGAAGATGAGGCAGAGAGCTCATCTTCCAAACCATTAAACAAGAACACTCAAAATGTGTCTATGCAGTCATCAACAAGAAACCCCTTTTGTAAAAGTACTGCAAAAAGTTGTCAGAATttctttgaaaacaaacatcAAATGAGCACACCTGGTGTAGACTCTAGTATTTGTGCAAACCTTAGAGTTACTGGAAAAGTTCCAGGAAATGAAAGGGCGAATAATAACTGGCCAAACACAAGGACATCTATTGGAAAAAGTAAACTGCAGAAAACACACTGCAAAAGCCTTCAGAGATGCGATTCCTGGGGAGAAAGAACTGattattttgatgatgatgataatgagtTATTAGACGAGGACCTATTTTTGGATGACATAGAAGAGAATTTGGATTTTGATCAATTGGATCAACTTGAGAAAGGAGCTCTACCAATAAGGAATTCTGCATCAGAGAACATTGCAAGTCTTCACCTTCAAGAACTTCAGGATGTGTTTGAGAATATTGATGATCAAGATTTGGATGATTTTGAATTAGATAATACAAATAATGGAAGCATTATACTGTGTGGGAAAACCATAAAGAGAAAAGAAGATAATTCAAGAGTTTGTAGCCTTGGAGTGGACACTGGAATTACTGATTATTCATCGAAGGGGAAATTCCCTATGAAACAAAGGAATAATAAGGAAGATGAAATTTCTGAGCAGGTCTGTAAAAAGCAAAGGCAAGCTTATGTCCCCCCTTTTGGAAACAGTATCAATCCAAAATCAGAAAAACATCCAACTTTTGGAAAAGatagacaaggggtgttggaAGGTATGGAAGTGATTGATGTTGATCATCCTGTCATGAAACCCAATgatcaaataacaaaactggACAAgatggaaagtatgggacgtTCTTATTCACTTGAGTCTCTGCCATTTACCTATCTCAAGACTGTGGAGCAGCATCTGCCATTTCAGGAGGATATCACCATCAGGATAAAGGCTTATGTCTCCACGCTTGTAAACCATTCCCAAACACCTGGAACTGGTTGGTGCGTCACTGTCAAGGTGAATGATGGGACAGCAGCGATGGACATGGATCTGGGAGCTGAGGTACTGACAGAGCTCCTTCAGATGCCCGTGGAGAGTTTCCAGAACCTGATGCAGAAAGCAAGAAAATCACCAGACACTGAACTTCGACGCTCGTTACAACAGCACACGGAGCAATTCCAGAGGAACCTGAGCATGGTCACGTGTTTAATGGACGTATCATTTGTATGCACTCGCCCCAGGCCTGTACTAATCCGACTGCGTCAGCCCTCACGTGATGATGTCAAGATGCTCATGTCCCGGATTAGAACCACGTGATACCACTCATTTCCCCGATAAGAATCACGTGACACTGCtcgttttattcttttgatcTGATCtggaattaattttttttttcagtcgaATAGTTAGGATTTAGAGACTGGCGATGCCCAGTCATGAAtatttttcaatataaaaatacCGCCTTTTGGTGGGGTAAAAGTGTGGTGGTGTGGAAGGGGGTACATGTGTTCCCTAACCCCACCCCTATCCACGCCTCTACCCCTGTAATGCAAATGTGCAAAGTATTTCACAAGGGATAAGTGCAATGAATGGGTCCTGGCGAGTACGCCTTTTGTCCGTGTGAGAGTCGACCATTTTGGGTTTTACTCAAGCAAAAAAAGCTTGATACTCTTGACGAGTATCGAATTAGTTGAGAAATATTTGCTTGAGCAATGGTGCACAGGTGGATAGAGTCCTTGTTGTCTCAATTCTCTGTGCGACATGGTTGCAGCAATGAAGACAGGAATTTGTCATGTCAGGAACGAGATTGttaaaagccgcattgtcactgcctcgtacccaggcgtCTCAAGTCTTTAAAAACACGTGAAAAATATACTAGTGAGCACAAAAAAGTCATGGAAAGGTTTAGCGCTGGCGCAAAGGACCAAGGGAAGGTTCGTTTTACCCAAGCACCCCTGCGCGCTTAGTCCAGTAACGCTAGTAAgcgcctgggtacgaggcaggcattgtcaccagtttactctCGGAGGTccaacggaaacctcaacagTTAAAACACaatagaatctattagaatccgcgctatatAGCAGACCACTCTAATATATCAGTTACATCCTCCAAGCGTTTTCCGTTAATAATAGTCgtgattgttacgtaatcgacaggaagtaaactggtgacaatgcggcatATTATACGAacacttcgactcgaacgggTACGTTCATTCGGGGGCCTGAATCATGCTTTACATATCCTTGCTAAGAGTTTTGAATAACAATAAATGGTTTTTCTAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16099	RMI1_C	Recq-mediated genome instability protein 1, C-terminal OB-fold	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032199	Domain	RecQ-mediated genome instability protein 1, C-terminal OB-fold domain	Interproscan
IPR044881	Homologous_superfamily	RecQ-mediated genome instability protein 1, N-terminal helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14790	RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000712	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0016604	Cellular Component	nuclear body	Interproscan
GO:0031422	Cellular Component	RecQ family helicase-topoisomerase III complex	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10990	RMI1, BRAP75; RecQ-mediated genome instability protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala