Gene detail

Detailed information of XP_048577351.1 in Nematostella vectensis

Genomic Location: NC_064047.1:5430497...5438258
NR annotation: XP_048577351.1, recQ-mediated genome instability protein 1 isoform X5 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_048721394.1

ATagaaatccaaaatggcggcaaatTCAGCTCGAAATACTTTGCTGTGGTTGAGAGAAAACTACCACGCGAATGTACGTCAGGGCTGGCTTGATGAATGCATAGACTTCATCAAAAGAACAAATAGTGGTCGTTCTATTACTCAGcacatctacatctacatctacaggCAGCTGACTTGCAAGAAATTGGTGAGGCAAGTTTACCCCAAGTCAAGGATGAGGTTATGATGGTAGAAGGAACTTATTGCTTGCAGGGTCGTTCTATTACTCAGCACCAGTTGAATCAGCTGGTATATGACAAATTCTTATTAGCTGACTTGCAAGAAATTGGTGAGGCAAGTTTACCCCAAATCAAGGATGAGGTTATGATGGTAGAAGGAACTTATTGCTTGCAGATTAATTCTGTTATAAATGTTGGACAATCAGCGTATTCACAAATCATGAAAATTAAAGGGAAAGATGACCCTGAAAGCCATTTGGACAAGAAACATACCAATGTTATCATCCAAGGGCCGATTGCCTGTAGGCTGGGCGTGTTACTTCTGACCAGACAATGTCTTGTATGCATTTTGGGTGGATCCACAGAAAGCCTAGTGGAGACCAACTCAACATGGAATTTACTTCACAGCAGCATAGGGCAAGAACCGCCAGAACCTCCAGCAGTTGTACAAATACTTGAAGATGAGGCAGAGAGCTCATCTTCCAAACCATTAAACAAGAACACTCAAAATGTGTCTATGCAGTCATCAACAAGAAACCCCTTTTGTAAAAGTACTGCAAAAAGTTGTCAGAATttctttgaaaacaaacatcAAATGAGCACACCTGGTGTAGACTCTAGTATTTGTGCAAACCTTAGAGTTACTGGAAAAGTTCCAGGAAATGAAAGGGCGAATAATAACTGGCCAAACACAAGGACATCTATTGGAAAAAGTAAACTGCAGAAAACACACTGCAAAAGCCTTCAGAGATGCGATTCCTGGGGAGAAAGAACTGattattttgatgatgatgataatgagtTATTAGACGAGGACCTATTTTTGGATGACATAGAAGAGAATTTGGATTTTGATCAATTGGATCAACTTGAGAAAGGAGCTCTACCAATAAGGAATTCTGCATCAGAGAACATTGCAAGTCTTCACCTTCAAGAACTTCAGGATGTGTTTGAGAATATTGATGATCAAGATTTGGATGATTTTGAATTAGATAATACAAATAATGGAAGCATTATACTGTGTGGGAAAACCATAAAGAGAAAAGAAGATAATTCAAGAGTTTGTAGCCTTGGAGTGGACACTGGAATTACTGATTATTCATCGAAGGGGAAATTCCCTATGAAACAAAGGAATAATAAGGAAGATGAAATTTCTGAGCAGGTCTGTAAAAAGCAAAGGCAAGCTTATGTCCCCCCTTTTGGAAACAGTATCAATCCAAAATCAGAAAAACATCCAACTTTTGGAAAAGatagacaaggggtgttggaAGGTATGGAAGTGATTGATGTTGATCATCCTGTCATGAAACCCAATgatcaaataacaaaactggACAAgatggaaagtatgggacgtTCTTATTCACTTGAGTCTCTGCCATTTACCTATCTCAAGACTGTGGAGCAGCATCTGCCATTTCAGGAGGATATCACCATCAGGATAAAGGCTTATGTCTCCACGCTTGTAAACCATTCCCAAACACCTGGAACTGGTTGGTGCGTCACTGTCAAGGTGAATGATGGGACAGCAGCGATGGACATGGATCTGGGAGCTGAGGTACTGACAGAGCTCCTTCAGATGCCCGTGGAGAGTTTCCAGAACCTGATGCAGAAAGCAAGAAAATCACCAGACACTGAACTTCGACGCTCGTTACAACAGCACACGGAGCAATTCCAGAGGAACCTGAGCATGGTCACGTGTTTAATGGACGTATCATTTGTATGCACTCGCCCCAGGCCTGTACTAATCCGACTGCGTCAGCCCTCACGTGATGATGTCAAGATGCTCATGTCCCGGATTAGAACCACGTGATACCACTCATTTCCCCGATAAGAATCACGTGACACTGCtcgttttattcttttgatcTGATCtggaattaattttttttttcagtcgaATAGTTAGGATTTAGAGACTGGCGATGCCCAGTCATGAAtatttttcaatataaaaatacCGCCTTTTGGTGGGGTAAAAGTGTGGTGGTGTGGAAGGGGGTACATGTGTTCCCTAACCCCACCCCTATCCACGCCTCTACCCCTGTAATGCAAATGTGCAAAGTATTTCACAAGGGATAAGTGCAATGAATGGGTCCTGGCGAGTACGCCTTTTGTCCGTGTGAGAGTCGACCATTTTGGGTTTTACTCAAGCAAAAAAAGCTTGATACTCTTGACGAGTATCGAATTAGTTGAGAAATATTTGCTTGAGCAATGGTGCACAGGTGGATAGAGTCCTTGTTGTCTCAATTCTCTGTGCGACATGGTTGCAGCAATGAAGACAGGAATTTGTCATGTCAGGAACGAGATTGttaaaagccgcattgtcactgcctcgtacccaggcgtCTCAAGTCTTTAAAAACACGTGAAAAATATACTAGTGAGCACAAAAAAGTCATGGAAAGGTTTAGCGCTGGCGCAAAGGACCAAGGGAAGGTTCGTTTTACCCAAGCACCCCTGCGCGCTTAGTCCAGTAACGCTAGTAAgcgcctgggtacgaggcaggcattgtcaccagtttactctCGGAGGTccaacggaaacctcaacagTTAAAACACaatagaatctattagaatccgcgctatatAGCAGACCACTCTAATATATCAGTTACATCCTCCAAGCGTTTTCCGTTAATAATAGTCgtgattgttacgtaatcgacaggaagtaaactggtgacaatgcggcatATTATACGAacacttcgactcgaacgggTACGTTCATTCGGGGGCCTGAATCATGCTTTACATATCCTTGCTAAGAGTTTTGAATAACAATAAATGGTTTTTCTAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08585	RMI1_N_C	RMI1, N-terminal OB-fold domain	Domain	Interproscan
PF16099	RMI1_C	Recq-mediated genome instability protein 1, C-terminal OB-fold	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013894	Domain	RecQ mediated genome instability protein 1, OB-fold domain	Interproscan
IPR042470	Homologous_superfamily	RecQ mediated genome instability protein, N-terminal OB-fold domain superfamily	Interproscan
IPR032199	Domain	RecQ-mediated genome instability protein 1, C-terminal OB-fold domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14790	RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000712	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0016604	Cellular Component	nuclear body	Interproscan
GO:0031422	Cellular Component	RecQ family helicase-topoisomerase III complex	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan