Gene detail

Detailed information of XP_048577353.1 in Nematostella vectensis

Genomic Location: NC_064047.1:5430497...5438258
NR annotation: XP_048577348.1, recQ-mediated genome instability protein 1 isoform X3 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_048721396.1

ATagaaatccaaaatggcggcaaatTCAGCTCGAAATACTTTGCTGTGGTTGAGAGAAAACTACCACGCGAATGTACGTCAGGGCTGGCTTGATGAATGCATAGACTTCATCAAAAGAACAAATAGTGGTCGTTCTATTACTCAGcacatctacatctacatctacaggCAGCTGACTTGCAAGAAATTGGTGAGGCAAGTTTACCCCAAGTCAAGGATGAGGTTATGATGGTAGAAGGAACTTATTGCTTGCAGATTAATTCTGTTATAAATGTTGGACAATCAGCGTATTCACAAATCATGAAAATTAAAGGGAAAGATGACCCTGAAAGCCATTTGGACAAGAAACATACCAATGTTATCATCCAAGGGCCGATTGCCTGTAGGCTGGGCGTGTTACTTCTGACCAGACAATGTCTTGTATGCATTTTGGGTGGATCCACAGAAAGCCTAGTGGAGACCAACTCAACATGGAATTTACTTCACAGCAGCATAGGGCAAGAACCGCCAGAACCTCCAGCAGTTGTACAAATACTTGAAGATGAGGCAGAGAGCTCATCTTCCAAACCATTAAACAAGAACACTCAAAATGTGTCTATGCAGTCATCAACAAGAAACCCCTTTTGTAAAAGTACTGCAAAAAGTTGTCAGAATttctttgaaaacaaacatcAAATGAGCACACCTGGTGTAGACTCTAGTATTTGTGCAAACCTTAGAGTTACTGGAAAAGTTCCAGGAAATGAAAGGGCGAATAATAACTGGCCAAACACAAGGACATCTATTGGAAAAAGTAAACTGCAGAAAACACACTGCAAAAGCCTTCAGAGATGCGATTCCTGGGGAGAAAGAACTGattattttgatgatgatgataatgagtTATTAGACGAGGACCTATTTTTGGATGACATAGAAGAGAATTTGGATTTTGATCAATTGGATCAACTTGAGAAAGGAGCTCTACCAATAAGGAATTCTGCATCAGAGAACATTGCAAGTCTTCACCTTCAAGAACTTCAGGATGTGTTTGAGAATATTGATGATCAAGATTTGGATGATTTTGAATTAGATAATACAAATAATGGAAGCATTATACTGTGTGGGAAAACCATAAAGAGAAAAGAAGATAATTCAAGAGTTTGTAGCCTTGGAGTGGACACTGGAATTACTGATTATTCATCGAAGGGGAAATTCCCTATGAAACAAAGGAATAATAAGGAAGATGAAATTTCTGAGCAGGTCTGTAAAAAGCAAAGGCAAGCTTATGTCCCCCCTTTTGGAAACAGTATCAATCCAAAATCAGAAAAACATCCAACTTTTGGAAAAGatagacaaggggtgttggaAGGTATGGAAGTGATTGATGTTGATCATCCTGTCATGAAACCCAATgatcaaataacaaaactggACAAgatggaaagtatgggacgtTCTTATTCACTTGAGTCTCTGCCATTTACCTATCTCAAGACTGTGGAGCAGCATCTGCCATTTCAGGAGGATATCACCATCAGGATAAAGGCTTATGTCTCCACGCTTGTAAACCATTCCCAAACACCTGGAACTGGTTGGTGCGTCACTGTCAAGGTGAATGATGGGACAGCAGCGATGGACATGGATCTGGGAGCTGAGGTACTGACAGAGCTCCTTCAGATGCCCGTGGAGAGTTTCCAGAACCTGATGCAGAAAGCAAGAAAATCACCAGACACTGAACTTCGACGCTCGTTACAACAGCACACGGAGCAATTCCAGAGGAACCTGAGCATGGTCACGTGTTTAATGGACGTATCATTTGTATGCACTCGCCCCAGGCCTGTACTAATCCGACTGCGTCAGCCCTCACGTGATGATGTCAAGATGCTCATGTCCCGGATTAGAACCACGTGATACCACTCATTTCCCCGATAAGAATCACGTGACACTGCtcgttttattcttttgatcTGATCtggaattaattttttttttcagtcgaATAGTTAGGATTTAGAGACTGGCGATGCCCAGTCATGAAtatttttcaatataaaaatacCGCCTTTTGGTGGGGTAAAAGTGTGGTGGTGTGGAAGGGGGTACATGTGTTCCCTAACCCCACCCCTATCCACGCCTCTACCCCTGTAATGCAAATGTGCAAAGTATTTCACAAGGGATAAGTGCAATGAATGGGTCCTGGCGAGTACGCCTTTTGTCCGTGTGAGAGTCGACCATTTTGGGTTTTACTCAAGCAAAAAAAGCTTGATACTCTTGACGAGTATCGAATTAGTTGAGAAATATTTGCTTGAGCAATGGTGCACAGGTGGATAGAGTCCTTGTTGTCTCAATTCTCTGTGCGACATGGTTGCAGCAATGAAGACAGGAATTTGTCATGTCAGGAACGAGATTGttaaaagccgcattgtcactgcctcgtacccaggcgtCTCAAGTCTTTAAAAACACGTGAAAAATATACTAGTGAGCACAAAAAAGTCATGGAAAGGTTTAGCGCTGGCGCAAAGGACCAAGGGAAGGTTCGTTTTACCCAAGCACCCCTGCGCGCTTAGTCCAGTAACGCTAGTAAgcgcctgggtacgaggcaggcattgtcaccagtttactctCGGAGGTccaacggaaacctcaacagTTAAAACACaatagaatctattagaatccgcgctatatAGCAGACCACTCTAATATATCAGTTACATCCTCCAAGCGTTTTCCGTTAATAATAGTCgtgattgttacgtaatcgacaggaagtaaactggtgacaatgcggcatATTATACGAacacttcgactcgaacgggTACGTTCATTCGGGGGCCTGAATCATGCTTTACATATCCTTGCTAAGAGTTTTGAATAACAATAAATGGTTTTTCTAAA

Protein

Uniprot

Uniprot term	Description
Q9H9A7	RecQ-mediated genome instability protein 1 OS=Homo sapiens OX=9606 GN=RMI1 PE=1 SV=3
Q9D4G9	RecQ-mediated genome instability protein 1 OS=Mus musculus OX=10090 GN=Rmi1 PE=2 SV=1
Q5ZHV8	RecQ-mediated genome instability protein 1 OS=Gallus gallus OX=9031 GN=RMI1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16099	RMI1_C	Recq-mediated genome instability protein 1, C-terminal OB-fold	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032199	Domain	RecQ-mediated genome instability protein 1, C-terminal OB-fold domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14790	RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000712	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0016604	Cellular Component	nuclear body	Interproscan
GO:0031422	Cellular Component	RecQ family helicase-topoisomerase III complex	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan