Gene detail

Detailed information of XP_048577572.1 in Nematostella vectensis

Genomic Location: NC_064035.1:15426190...15428862
NR annotation: XP_048577572.1, uncharacterized protein K02A2.6-like [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC116604552

ATGGAGAAAATCAAGCCACCGCCAGAACTAGACATGGATAGTCGGAATTTAGCGGAAGCATGGAGAGAGTTTGAAGAGAGCTGGGAGCTGTACGAGATATCGAGTGGGCTAACAACAAAGGAGGAGAAGGTCCAAGTGGCCACACTTTACAGTATAGTGGGGCTGAAAGCCCGAAGAGTTTTAAAGACGCTACCAGGAATACCAGAGGTGATAGCAGAGAGAAAGGTCAAAGACACCCTGAAGGCCCTAAAGGATTATTGTATGCCGCGCACGAATGTAACCTATGAGAGGTACATTTTCCGAACAACCACTCAAGGGGAACGGCAGTTCGATACATTTCTAACCGAGTTGAGACGCAAGGCCGCGCTGTGTGACTTTGGTGTAATAAAGGACTCGCTCATACGTGATCAAATCGTTATTGGAACCAACAGCCCTACGCTGAGGGAGCGACTCCTCCGTGAACCGGATTTAACCCTCACGACAGCCATAAATCTGTGCCGAGCTTCAGAGCAGGCGATTGAGCAATCGAAGTTGATCACGAGGCCAGAGCAGTCACAGGAAATCAAGGAAATTGATTCGCTAAACGCAAGAGCTCCGACACAGAATCAGAACAAGGGACAGAGCTTCAAATGCAGATTTTGTGGGCTGCAACACGATCAGGGGAATTGCACAGCATACAACGCAACCTGCCATCGGTGCAAGGAGAAAAATCACTTCGCCCGCTGTTGCACGAGGAAACTCCCCCAACCGCAAGCACATCAACAACAGCGTGGTGCTTCTAGAGCTATCCGCGAGGTCGAGTTACAAGAGCAGCAAGACCCAAACAACCTGTATAAAGAAATCGAGAGCCTTTACATCGAAGAGATCAAAAGTAGCAACAAGATAAAGTGTGTGGAACAGTGCCTGAGTTTGAATGGGAAGAACGTGACTTTCAAATTAGACAGCGGCGCAGAATGTAACGTGATCCCGGAAGCGGTTGCGAAAGAACTTGACTGCACGATCGAACAAACAGCACTCAAACTACGAGCTTTCGAAGGAAACCCCCTAAAAACTGTAGGCAAATGCTATATAGATACACTTGTCCAAGGGCAAGATAGCCCAATCGCAGTTGAGTATTATATAGTAGAGCACAATATTAGACCCATTTTAGGCGTAGAAACGTGTCTGAAGTTAGGTTTAATCACATTTAGTGGTGGTGCGCGAGCGCAAGGTCTTAGCATAGATGCGCTAGAGCAGCCACGCAACCTCCTGGATCAGTTTGAGGATGTTTTCACAGGTCTGGGATGTGTTGAGGGTGAGTATGATATCTGCCTCAAAGAGGGCGCAAGTCCTACAATTCAGCACCAACGAAATGTTCCACTGCGTTTGATAGAGCAGTTAAAAACCACCATCAATGACCTTGAGCAACGGGAGGTAATCAAAAAGGTCAACGAGCCAGTTGAATGGGTGAGTAACCTTGTTATTGTAGAGAAGAAAGATAAATCCCTTAGACTATGCCTAGACCCCCCTGATTTAAATGAAGCCATTGTAAGGGAAGATTATAAACCGCCTTCAATCGAGAAAATATCAAGCACCCTTAATGGGTGTACGGTATTTACAGTTGTAGATATGTCCAGTTGCTATTGGCATAAGAAGCTGAGTGATGCAGCATCATTACTCTGCACATTTAACACGCCCTTTGGTAGGTTCCGGTTTTGTAGAATGCCATTTGGAATTTCATGTGCTAGTGAAGTGGCACAAAAAATGGTAGAGGAGCATTTTGGTGACATAGAAGGTGTGCTTCCTGTTTATGATGACATTATTATTGCAGGAAAAACGACAGCCGAGCATGACAGAGCCCTACACAAGGTGCTTGAGAGAGCCAGGGAACGCAACATCAGATTCAACAAATCCAAGATACAGTACCGGCTAGACAAGGTTGACGCCTCAAAGAGTGGACTTGGAGCCTGTTTGCTCCAGAATGGTCAACCAGTAGCATATGCCTCCAGGGCCCTGACTAGTGCAGAGCAAAACTATGCACAAATAGAGAAGGAGTTGCTTTAA

Transcript

rna-XM_048721615.1

TCTATGAAGACTGAATATAGTAAAGAGATCACAAACATATTACCTAGAATCAGTTAAACTCATTGCATAAAAGTACCACAAccataagtatttttttctttgcactTGTTTAGATGATAATTGTTATGAGTAGTCCTTATATGGTAGTCACGCCATCACGTGACTAACAAGCAACCCTGTAAGCCTGCGATGTGATTTGAATAAATTAGTCTGAATGTGATCTTGCCGTAGCCTGTAGTCCTGTTACTATTACAGCCATAACTCAAATCATTACATGGTACCAGGAGTCGGAGGTCCAGGGCGACAATAATCATAGATATGGAGAAAATCAAGCCACCGCCAGAACTAGACATGGATAGTCGGAATTTAGCGGAAGCATGGAGAGAGTTTGAAGAGAGCTGGGAGCTGTACGAGATATCGAGTGGGCTAACAACAAAGGAGGAGAAGGTCCAAGTGGCCACACTTTACAGTATAGTGGGGCTGAAAGCCCGAAGAGTTTTAAAGACGCTACCAGGAATACCAGAGGTGATAGCAGAGAGAAAGGTCAAAGACACCCTGAAGGCCCTAAAGGATTATTGTATGCCGCGCACGAATGTAACCTATGAGAGGTACATTTTCCGAACAACCACTCAAGGGGAACGGCAGTTCGATACATTTCTAACCGAGTTGAGACGCAAGGCCGCGCTGTGTGACTTTGGTGTAATAAAGGACTCGCTCATACGTGATCAAATCGTTATTGGAACCAACAGCCCTACGCTGAGGGAGCGACTCCTCCGTGAACCGGATTTAACCCTCACGACAGCCATAAATCTGTGCCGAGCTTCAGAGCAGGCGATTGAGCAATCGAAGTTGATCACGAGGCCAGAGCAGTCACAGGAAATCAAGGAAATTGATTCGCTAAACGCAAGAGCTCCGACACAGAATCAGAACAAGGGACAGAGCTTCAAATGCAGATTTTGTGGGCTGCAACACGATCAGGGGAATTGCACAGCATACAACGCAACCTGCCATCGGTGCAAGGAGAAAAATCACTTCGCCCGCTGTTGCACGAGGAAACTCCCCCAACCGCAAGCACATCAACAACAGCGTGGTGCTTCTAGAGCTATCCGCGAGGTCGAGTTACAAGAGCAGCAAGACCCAAACAACCTGTATAAAGAAATCGAGAGCCTTTACATCGAAGAGATCAAAAGTAGCAACAAGATAAAGTGTGTGGAACAGTGCCTGAGTTTGAATGGGAAGAACGTGACTTTCAAATTAGACAGCGGCGCAGAATGTAACGTGATCCCGGAAGCGGTTGCGAAAGAACTTGACTGCACGATCGAACAAACAGCACTCAAACTACGAGCTTTCGAAGGAAACCCCCTAAAAACTGTAGGCAAATGCTATATAGATACACTTGTCCAAGGGCAAGATAGCCCAATCGCAGTTGAGTATTATATAGTAGAGCACAATATTAGACCCATTTTAGGCGTAGAAACGTGTCTGAAGTTAGGTTTAATCACATTTAGTGGTGGTGCGCGAGCGCAAGGTCTTAGCATAGATGCGCTAGAGCAGCCACGCAACCTCCTGGATCAGTTTGAGGATGTTTTCACAGGTCTGGGATGTGTTGAGGGTGAGTATGATATCTGCCTCAAAGAGGGCGCAAGTCCTACAATTCAGCACCAACGAAATGTTCCACTGCGTTTGATAGAGCAGTTAAAAACCACCATCAATGACCTTGAGCAACGGGAGGTAATCAAAAAGGTCAACGAGCCAGTTGAATGGGTGAGTAACCTTGTTATTGTAGAGAAGAAAGATAAATCCCTTAGACTATGCCTAGACCCCCCTGATTTAAATGAAGCCATTGTAAGGGAAGATTATAAACCGCCTTCAATCGAGAAAATATCAAGCACCCTTAATGGGTGTACGGTATTTACAGTTGTAGATATGTCCAGTTGCTATTGGCATAAGAAGCTGAGTGATGCAGCATCATTACTCTGCACATTTAACACGCCCTTTGGTAGGTTCCGGTTTTGTAGAATGCCATTTGGAATTTCATGTGCTAGTGAAGTGGCACAAAAAATGGTAGAGGAGCATTTTGGTGACATAGAAGGTGTGCTTCCTGTTTATGATGACATTATTATTGCAGGAAAAACGACAGCCGAGCATGACAGAGCCCTACACAAGGTGCTTGAGAGAGCCAGGGAACGCAACATCAGATTCAACAAATCCAAGATACAGTACCGGCTAGACAAGGTTGACGCCTCAAAGAGTGGACTTGGAGCCTGTTTGCTCCAGAATGGTCAACCAGTAGCATATGCCTCCAGGGCCCTGACTAGTGCAGAGCAAAACTATGCACAAATAGAGAAGGAGTTGCTTTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-